Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC144BQ3MJ40 PLK5-205ENST00000642079 1969 ntBASIC23.24■■□□□ 1.31
CCDC144BQ3MJ40 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC144BQ3MJ40 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC144BQ3MJ40 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC144BQ3MJ40 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC144BQ3MJ40 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC23.24■■□□□ 1.31
CCDC144BQ3MJ40 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC144BQ3MJ40 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC144BQ3MJ40 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC23.24■■□□□ 1.31
CCDC144BQ3MJ40 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC23.24■■□□□ 1.31
CCDC144BQ3MJ40 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
CCDC144BQ3MJ40 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC144BQ3MJ40 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
CCDC144BQ3MJ40 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC144BQ3MJ40 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC23.23■■□□□ 1.31
CCDC144BQ3MJ40 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC144BQ3MJ40 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC144BQ3MJ40 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC23.23■■□□□ 1.31
CCDC144BQ3MJ40 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC144BQ3MJ40 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC144BQ3MJ40 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC23.23■■□□□ 1.31
CCDC144BQ3MJ40 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC144BQ3MJ40 SPIB-206ENST00000596074 847 ntTSL 2 BASIC23.23■■□□□ 1.31
CCDC144BQ3MJ40 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC144BQ3MJ40 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC144BQ3MJ40 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC144BQ3MJ40 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC144BQ3MJ40 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC144BQ3MJ40 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC23.23■■□□□ 1.31
CCDC144BQ3MJ40 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC144BQ3MJ40 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC23.23■■□□□ 1.31
CCDC144BQ3MJ40 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC144BQ3MJ40 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC144BQ3MJ40 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC144BQ3MJ40 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC23.22■■□□□ 1.31
CCDC144BQ3MJ40 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC23.22■■□□□ 1.31
CCDC144BQ3MJ40 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC23.22■■□□□ 1.31
CCDC144BQ3MJ40 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC23.22■■□□□ 1.31
CCDC144BQ3MJ40 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC144BQ3MJ40 POM121L13P-201ENST00000422362 380 ntBASIC23.22■■□□□ 1.31
CCDC144BQ3MJ40 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC23.22■■□□□ 1.31
CCDC144BQ3MJ40 Z99916.2-201ENST00000604037 246 ntBASIC23.22■■□□□ 1.31
CCDC144BQ3MJ40 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
CCDC144BQ3MJ40 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC144BQ3MJ40 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC144BQ3MJ40 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC144BQ3MJ40 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC23.22■■□□□ 1.31
CCDC144BQ3MJ40 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
CCDC144BQ3MJ40 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC144BQ3MJ40 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC144BQ3MJ40 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
CCDC144BQ3MJ40 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC144BQ3MJ40 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC144BQ3MJ40 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
CCDC144BQ3MJ40 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
CCDC144BQ3MJ40 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC23.21■■□□□ 1.31
CCDC144BQ3MJ40 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC144BQ3MJ40 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC144BQ3MJ40 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC144BQ3MJ40 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC23.21■■□□□ 1.31
CCDC144BQ3MJ40 MIR4497-201ENST00000583208 89 ntBASIC23.21■■□□□ 1.31
CCDC144BQ3MJ40 KLF2-202ENST00000592003 564 ntTSL 3 BASIC23.21■■□□□ 1.31
CCDC144BQ3MJ40 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC144BQ3MJ40 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC23.21■■□□□ 1.31
CCDC144BQ3MJ40 AC006128.1-201ENST00000624704 1661 ntBASIC23.21■■□□□ 1.31
CCDC144BQ3MJ40 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
CCDC144BQ3MJ40 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
CCDC144BQ3MJ40 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC144BQ3MJ40 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
CCDC144BQ3MJ40 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC23.21■■□□□ 1.31
CCDC144BQ3MJ40 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC144BQ3MJ40 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC144BQ3MJ40 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.31
CCDC144BQ3MJ40 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC23.2■■□□□ 1.3
CCDC144BQ3MJ40 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC144BQ3MJ40 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
CCDC144BQ3MJ40 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC144BQ3MJ40 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC23.2■■□□□ 1.3
CCDC144BQ3MJ40 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC144BQ3MJ40 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC23.2■■□□□ 1.3
CCDC144BQ3MJ40 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC144BQ3MJ40 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC23.2■■□□□ 1.3
CCDC144BQ3MJ40 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC144BQ3MJ40 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC23.2■■□□□ 1.3
CCDC144BQ3MJ40 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC23.2■■□□□ 1.3
CCDC144BQ3MJ40 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC144BQ3MJ40 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC144BQ3MJ40 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC23.2■■□□□ 1.3
CCDC144BQ3MJ40 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC23.2■■□□□ 1.3
CCDC144BQ3MJ40 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC144BQ3MJ40 C2orf69P4-201ENST00000565394 541 ntBASIC23.2■■□□□ 1.3
CCDC144BQ3MJ40 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC23.2■■□□□ 1.3
CCDC144BQ3MJ40 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC23.2■■□□□ 1.3
CCDC144BQ3MJ40 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC23.2■■□□□ 1.3
CCDC144BQ3MJ40 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC23.2■■□□□ 1.3
CCDC144BQ3MJ40 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC144BQ3MJ40 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC144BQ3MJ40 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC23.2■■□□□ 1.3
CCDC144BQ3MJ40 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms