Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 CYP2T3P-201ENST00000601990 817 ntBASIC16.11■□□□□ 0.17
CX3CL1P78423 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CX3CL1P78423 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CX3CL1P78423 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CX3CL1P78423 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CX3CL1P78423 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CX3CL1P78423 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC16.11■□□□□ 0.17
CX3CL1P78423 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CX3CL1P78423 GCK-205ENST00000437084 1385 ntTSL 5 BASIC16.11■□□□□ 0.17
CX3CL1P78423 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CX3CL1P78423 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CX3CL1P78423 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
CX3CL1P78423 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC16.11■□□□□ 0.17
CX3CL1P78423 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CX3CL1P78423 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CX3CL1P78423 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CX3CL1P78423 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC16.1■□□□□ 0.17
CX3CL1P78423 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CX3CL1P78423 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CX3CL1P78423 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CX3CL1P78423 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CX3CL1P78423 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CX3CL1P78423 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CX3CL1P78423 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CX3CL1P78423 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CX3CL1P78423 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC16.1■□□□□ 0.17
CX3CL1P78423 AC083906.2-201ENST00000511578 360 ntBASIC16.1■□□□□ 0.17
CX3CL1P78423 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC16.1■□□□□ 0.17
CX3CL1P78423 OAS3-207ENST00000551007 998 ntTSL 2 BASIC16.1■□□□□ 0.17
CX3CL1P78423 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CX3CL1P78423 AL121832.2-201ENST00000610979 668 ntBASIC16.1■□□□□ 0.17
CX3CL1P78423 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CX3CL1P78423 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CX3CL1P78423 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC16.1■□□□□ 0.17
CX3CL1P78423 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC16.1■□□□□ 0.17
CX3CL1P78423 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CX3CL1P78423 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CX3CL1P78423 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC16.1■□□□□ 0.17
CX3CL1P78423 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CX3CL1P78423 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC16.1■□□□□ 0.17
CX3CL1P78423 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CX3CL1P78423 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CX3CL1P78423 MKRN4P-201ENST00000444706 1521 ntBASIC16.09■□□□□ 0.17
CX3CL1P78423 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CX3CL1P78423 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC16.09■□□□□ 0.17
CX3CL1P78423 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CX3CL1P78423 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CX3CL1P78423 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
CX3CL1P78423 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CX3CL1P78423 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC16.09■□□□□ 0.17
CX3CL1P78423 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CX3CL1P78423 METTL15-202ENST00000403099 795 ntTSL 5 BASIC16.09■□□□□ 0.17
CX3CL1P78423 ISCU-212ENST00000547005 795 ntTSL 3 BASIC16.09■□□□□ 0.17
CX3CL1P78423 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC16.09■□□□□ 0.17
CX3CL1P78423 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC16.09■□□□□ 0.17
CX3CL1P78423 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC16.09■□□□□ 0.17
CX3CL1P78423 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
CX3CL1P78423 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CX3CL1P78423 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CX3CL1P78423 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC16.09■□□□□ 0.17
CX3CL1P78423 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CX3CL1P78423 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CX3CL1P78423 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CX3CL1P78423 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CX3CL1P78423 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
CX3CL1P78423 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CX3CL1P78423 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC16.08■□□□□ 0.17
CX3CL1P78423 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CX3CL1P78423 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
CX3CL1P78423 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
CX3CL1P78423 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC16.08■□□□□ 0.16
CX3CL1P78423 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CX3CL1P78423 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CX3CL1P78423 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CX3CL1P78423 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC16.08■□□□□ 0.16
CX3CL1P78423 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CX3CL1P78423 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
CX3CL1P78423 NCF1B-203ENST00000435988 1254 ntBASIC16.08■□□□□ 0.16
CX3CL1P78423 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC16.08■□□□□ 0.16
CX3CL1P78423 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CX3CL1P78423 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CX3CL1P78423 AL589743.5-201ENST00000616611 1050 ntBASIC16.08■□□□□ 0.16
CX3CL1P78423 AC105020.6-201ENST00000621523 1217 ntBASIC16.08■□□□□ 0.16
CX3CL1P78423 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
CX3CL1P78423 DET1-207ENST00000564406 2315 ntTSL 2 BASIC16.08■□□□□ 0.16
CX3CL1P78423 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CX3CL1P78423 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CX3CL1P78423 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC16.08■□□□□ 0.16
CX3CL1P78423 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CX3CL1P78423 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC16.08■□□□□ 0.16
CX3CL1P78423 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CL1P78423 STK25-205ENST00000405883 1904 ntTSL 2 BASIC16.07■□□□□ 0.16
CX3CL1P78423 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CL1P78423 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC16.07■□□□□ 0.16
CX3CL1P78423 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC16.07■□□□□ 0.16
CX3CL1P78423 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CL1P78423 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC16.07■□□□□ 0.16
CX3CL1P78423 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CL1P78423 AL020996.1-203ENST00000536896 2307 ntBASIC16.07■□□□□ 0.16
CX3CL1P78423 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms