Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.6■□□□□ 0.73
PKNOX1P55347 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.6■□□□□ 0.73
PKNOX1P55347 AL591742.1-201ENST00000604433 565 ntBASIC19.6■□□□□ 0.73
PKNOX1P55347 AC010536.3-201ENST00000620306 533 ntBASIC19.6■□□□□ 0.73
PKNOX1P55347 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PKNOX1P55347 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
PKNOX1P55347 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
PKNOX1P55347 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
PKNOX1P55347 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
PKNOX1P55347 AC087633.2-202ENST00000565166 1439 ntBASIC19.59■□□□□ 0.73
PKNOX1P55347 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.59■□□□□ 0.73
PKNOX1P55347 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PKNOX1P55347 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PKNOX1P55347 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PKNOX1P55347 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PKNOX1P55347 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PKNOX1P55347 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
PKNOX1P55347 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
PKNOX1P55347 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PKNOX1P55347 NTF6G-201ENST00000591094 616 ntBASIC19.59■□□□□ 0.73
PKNOX1P55347 AL356652.1-201ENST00000615962 565 ntBASIC19.59■□□□□ 0.73
PKNOX1P55347 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PKNOX1P55347 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.59■□□□□ 0.73
PKNOX1P55347 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
PKNOX1P55347 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.59■□□□□ 0.73
PKNOX1P55347 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PKNOX1P55347 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.59■□□□□ 0.73
PKNOX1P55347 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.59■□□□□ 0.73
PKNOX1P55347 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.59■□□□□ 0.73
PKNOX1P55347 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PKNOX1P55347 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.59■□□□□ 0.73
PKNOX1P55347 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PKNOX1P55347 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PKNOX1P55347 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
PKNOX1P55347 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PKNOX1P55347 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
PKNOX1P55347 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
PKNOX1P55347 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PKNOX1P55347 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.58■□□□□ 0.73
PKNOX1P55347 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PKNOX1P55347 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PKNOX1P55347 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PKNOX1P55347 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PKNOX1P55347 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PKNOX1P55347 AC034268.1-201ENST00000441047 882 ntBASIC19.58■□□□□ 0.72
PKNOX1P55347 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.58■□□□□ 0.72
PKNOX1P55347 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
PKNOX1P55347 AL162412.1-201ENST00000567129 965 ntBASIC19.58■□□□□ 0.72
PKNOX1P55347 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
PKNOX1P55347 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC19.58■□□□□ 0.72
PKNOX1P55347 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.58■□□□□ 0.72
PKNOX1P55347 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.58■□□□□ 0.72
PKNOX1P55347 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
PKNOX1P55347 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.58■□□□□ 0.72
PKNOX1P55347 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PKNOX1P55347 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
PKNOX1P55347 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PKNOX1P55347 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.57■□□□□ 0.72
PKNOX1P55347 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PKNOX1P55347 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
PKNOX1P55347 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PKNOX1P55347 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PKNOX1P55347 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.57■□□□□ 0.72
PKNOX1P55347 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PKNOX1P55347 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.57■□□□□ 0.72
PKNOX1P55347 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PKNOX1P55347 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PKNOX1P55347 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
PKNOX1P55347 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
PKNOX1P55347 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.57■□□□□ 0.72
PKNOX1P55347 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.57■□□□□ 0.72
PKNOX1P55347 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.57■□□□□ 0.72
PKNOX1P55347 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.57■□□□□ 0.72
PKNOX1P55347 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
PKNOX1P55347 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PKNOX1P55347 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PKNOX1P55347 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.57■□□□□ 0.72
PKNOX1P55347 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.57■□□□□ 0.72
PKNOX1P55347 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
PKNOX1P55347 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
PKNOX1P55347 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PKNOX1P55347 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PKNOX1P55347 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
PKNOX1P55347 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PKNOX1P55347 BX119927.1-201ENST00000636596 1552 ntBASIC19.57■□□□□ 0.72
PKNOX1P55347 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PKNOX1P55347 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PKNOX1P55347 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.56■□□□□ 0.72
PKNOX1P55347 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.56■□□□□ 0.72
PKNOX1P55347 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PKNOX1P55347 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.56■□□□□ 0.72
PKNOX1P55347 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
PKNOX1P55347 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
PKNOX1P55347 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
PKNOX1P55347 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
PKNOX1P55347 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.56■□□□□ 0.72
PKNOX1P55347 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.56■□□□□ 0.72
PKNOX1P55347 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
PKNOX1P55347 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PKNOX1P55347 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms