Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC061975.6-201ENST00000579045 1553 ntBASIC16.26■□□□□ 0.19
CDX1P47902 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDX1P47902 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDX1P47902 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDX1P47902 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDX1P47902 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
CDX1P47902 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDX1P47902 BMP1-204ENST00000397814 836 ntTSL 4 BASIC16.26■□□□□ 0.19
CDX1P47902 HLA-L-209ENST00000420110 1011 ntBASIC16.26■□□□□ 0.19
CDX1P47902 MAP2K4P1-201ENST00000438453 1195 ntBASIC16.26■□□□□ 0.19
CDX1P47902 CNN2P6-201ENST00000439038 900 ntBASIC16.26■□□□□ 0.19
CDX1P47902 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC16.26■□□□□ 0.19
CDX1P47902 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC16.26■□□□□ 0.19
CDX1P47902 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC16.26■□□□□ 0.19
CDX1P47902 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
CDX1P47902 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC16.26■□□□□ 0.19
CDX1P47902 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDX1P47902 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC16.26■□□□□ 0.19
CDX1P47902 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDX1P47902 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDX1P47902 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
CDX1P47902 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CDX1P47902 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
CDX1P47902 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC16.26■□□□□ 0.19
CDX1P47902 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
CDX1P47902 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDX1P47902 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDX1P47902 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
CDX1P47902 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDX1P47902 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
CDX1P47902 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CDX1P47902 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC16.25■□□□□ 0.19
CDX1P47902 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDX1P47902 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDX1P47902 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDX1P47902 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
CDX1P47902 GPX1P1-201ENST00000388829 606 ntBASIC16.25■□□□□ 0.19
CDX1P47902 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
CDX1P47902 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CDX1P47902 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC16.25■□□□□ 0.19
CDX1P47902 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC16.25■□□□□ 0.19
CDX1P47902 AC243732.1-201ENST00000612648 864 ntBASIC16.25■□□□□ 0.19
CDX1P47902 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDX1P47902 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC16.25■□□□□ 0.19
CDX1P47902 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDX1P47902 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDX1P47902 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC16.25■□□□□ 0.19
CDX1P47902 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
CDX1P47902 AC120498.9-201ENST00000339021 3867 ntBASIC16.25■□□□□ 0.19
CDX1P47902 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDX1P47902 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC16.25■□□□□ 0.19
CDX1P47902 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDX1P47902 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
CDX1P47902 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDX1P47902 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDX1P47902 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC16.24■□□□□ 0.19
CDX1P47902 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDX1P47902 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
CDX1P47902 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC16.24■□□□□ 0.19
CDX1P47902 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDX1P47902 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDX1P47902 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDX1P47902 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDX1P47902 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDX1P47902 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDX1P47902 BET1L-204ENST00000410108 637 ntTSL 3 BASIC16.24■□□□□ 0.19
CDX1P47902 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC16.24■□□□□ 0.19
CDX1P47902 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDX1P47902 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDX1P47902 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDX1P47902 AL121832.2-201ENST00000610979 668 ntBASIC16.24■□□□□ 0.19
CDX1P47902 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC16.24■□□□□ 0.19
CDX1P47902 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDX1P47902 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDX1P47902 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC16.24■□□□□ 0.19
CDX1P47902 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC16.24■□□□□ 0.19
CDX1P47902 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
CDX1P47902 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDX1P47902 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CDX1P47902 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC16.23■□□□□ 0.19
CDX1P47902 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC16.23■□□□□ 0.19
CDX1P47902 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDX1P47902 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDX1P47902 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDX1P47902 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDX1P47902 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDX1P47902 RBM17P2-201ENST00000616397 1405 ntBASIC16.23■□□□□ 0.19
CDX1P47902 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC16.23■□□□□ 0.19
CDX1P47902 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC16.23■□□□□ 0.19
CDX1P47902 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDX1P47902 AC083906.2-201ENST00000511578 360 ntBASIC16.23■□□□□ 0.19
CDX1P47902 AC133552.2-202ENST00000575694 574 ntBASIC16.23■□□□□ 0.19
CDX1P47902 AL109923.1-201ENST00000618799 583 ntBASIC16.23■□□□□ 0.19
CDX1P47902 AP005212.1-201ENST00000581547 1997 ntBASIC16.23■□□□□ 0.19
CDX1P47902 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDX1P47902 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDX1P47902 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
CDX1P47902 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDX1P47902 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDX1P47902 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms