Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HADHAP40939 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
HADHAP40939 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HADHAP40939 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HADHAP40939 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.24■□□□□ 0.83
HADHAP40939 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HADHAP40939 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HADHAP40939 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HADHAP40939 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HADHAP40939 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
HADHAP40939 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HADHAP40939 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HADHAP40939 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
HADHAP40939 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HADHAP40939 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.24■□□□□ 0.83
HADHAP40939 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
HADHAP40939 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.24■□□□□ 0.83
HADHAP40939 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.24■□□□□ 0.83
HADHAP40939 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.24■□□□□ 0.83
HADHAP40939 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
HADHAP40939 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.24■□□□□ 0.83
HADHAP40939 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
HADHAP40939 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC20.24■□□□□ 0.83
HADHAP40939 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC20.24■□□□□ 0.83
HADHAP40939 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HADHAP40939 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HADHAP40939 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.24■□□□□ 0.83
HADHAP40939 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HADHAP40939 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
HADHAP40939 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HADHAP40939 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HADHAP40939 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
HADHAP40939 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
HADHAP40939 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.23■□□□□ 0.83
HADHAP40939 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.23■□□□□ 0.83
HADHAP40939 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HADHAP40939 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HADHAP40939 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.23■□□□□ 0.83
HADHAP40939 AC112907.3-201ENST00000577781 2400 ntBASIC20.23■□□□□ 0.83
HADHAP40939 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HADHAP40939 AIRN-201ENST00000601203 4374 ntBASIC20.23■□□□□ 0.83
HADHAP40939 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HADHAP40939 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.23■□□□□ 0.83
HADHAP40939 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
HADHAP40939 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HADHAP40939 METTL15-202ENST00000403099 795 ntTSL 5 BASIC20.23■□□□□ 0.83
HADHAP40939 AL355472.2-201ENST00000422958 438 ntBASIC20.23■□□□□ 0.83
HADHAP40939 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC20.23■□□□□ 0.83
HADHAP40939 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.23■□□□□ 0.83
HADHAP40939 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
HADHAP40939 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.23■□□□□ 0.83
HADHAP40939 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.23■□□□□ 0.83
HADHAP40939 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.23■□□□□ 0.83
HADHAP40939 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.23■□□□□ 0.83
HADHAP40939 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.23■□□□□ 0.83
HADHAP40939 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.23■□□□□ 0.83
HADHAP40939 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HADHAP40939 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HADHAP40939 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
HADHAP40939 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HADHAP40939 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HADHAP40939 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
HADHAP40939 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.22■□□□□ 0.83
HADHAP40939 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
HADHAP40939 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HADHAP40939 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.22■□□□□ 0.83
HADHAP40939 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HADHAP40939 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.22■□□□□ 0.83
HADHAP40939 AC083906.2-201ENST00000511578 360 ntBASIC20.22■□□□□ 0.83
HADHAP40939 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.22■□□□□ 0.83
HADHAP40939 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.22■□□□□ 0.83
HADHAP40939 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HADHAP40939 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
HADHAP40939 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.22■□□□□ 0.83
HADHAP40939 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HADHAP40939 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.22■□□□□ 0.83
HADHAP40939 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
HADHAP40939 AFG3L1P-217ENST00000557444 2447 ntBASIC20.22■□□□□ 0.83
HADHAP40939 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
HADHAP40939 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.21■□□□□ 0.83
HADHAP40939 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.21■□□□□ 0.83
HADHAP40939 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.21■□□□□ 0.83
HADHAP40939 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HADHAP40939 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.21■□□□□ 0.83
HADHAP40939 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HADHAP40939 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HADHAP40939 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.21■□□□□ 0.83
HADHAP40939 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
HADHAP40939 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HADHAP40939 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HADHAP40939 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
HADHAP40939 LSM12P1-201ENST00000411836 588 ntBASIC20.21■□□□□ 0.83
HADHAP40939 NCF1B-203ENST00000435988 1254 ntBASIC20.21■□□□□ 0.83
HADHAP40939 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.21■□□□□ 0.83
HADHAP40939 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.21■□□□□ 0.83
HADHAP40939 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.21■□□□□ 0.83
HADHAP40939 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.21■□□□□ 0.83
HADHAP40939 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.21■□□□□ 0.83
HADHAP40939 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HADHAP40939 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms