Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
LDLRP01130 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LDLRP01130 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LDLRP01130 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LDLRP01130 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LDLRP01130 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.27■□□□□ 0.68
LDLRP01130 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.27■□□□□ 0.68
LDLRP01130 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
LDLRP01130 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
LDLRP01130 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
LDLRP01130 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
LDLRP01130 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.27■□□□□ 0.67
LDLRP01130 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
LDLRP01130 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LDLRP01130 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LDLRP01130 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.26■□□□□ 0.67
LDLRP01130 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LDLRP01130 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LDLRP01130 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LDLRP01130 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.26■□□□□ 0.67
LDLRP01130 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.26■□□□□ 0.67
LDLRP01130 CNN2P6-201ENST00000439038 900 ntBASIC19.26■□□□□ 0.67
LDLRP01130 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
LDLRP01130 RPS2P52-201ENST00000469610 820 ntBASIC19.26■□□□□ 0.67
LDLRP01130 RNA5SP413-201ENST00000516373 109 ntBASIC19.26■□□□□ 0.67
LDLRP01130 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LDLRP01130 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LDLRP01130 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LDLRP01130 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.26■□□□□ 0.67
LDLRP01130 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LDLRP01130 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LDLRP01130 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
LDLRP01130 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LDLRP01130 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
LDLRP01130 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.25■□□□□ 0.67
LDLRP01130 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LDLRP01130 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.25■□□□□ 0.67
LDLRP01130 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LDLRP01130 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.25■□□□□ 0.67
LDLRP01130 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
LDLRP01130 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LDLRP01130 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LDLRP01130 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LDLRP01130 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.25■□□□□ 0.67
LDLRP01130 MIR4758-201ENST00000577688 71 ntBASIC19.25■□□□□ 0.67
LDLRP01130 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.25■□□□□ 0.67
LDLRP01130 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC19.25■□□□□ 0.67
LDLRP01130 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
LDLRP01130 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.25■□□□□ 0.67
LDLRP01130 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.25■□□□□ 0.67
LDLRP01130 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
LDLRP01130 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LDLRP01130 TCF3P1-201ENST00000423021 1937 ntBASIC19.25■□□□□ 0.67
LDLRP01130 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LDLRP01130 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
LDLRP01130 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LDLRP01130 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
LDLRP01130 AC116562.4-201ENST00000641316 2276 ntBASIC19.25■□□□□ 0.67
LDLRP01130 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
LDLRP01130 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
LDLRP01130 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
LDLRP01130 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LDLRP01130 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.24■□□□□ 0.67
LDLRP01130 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LDLRP01130 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
LDLRP01130 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LDLRP01130 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LDLRP01130 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.24■□□□□ 0.67
LDLRP01130 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
LDLRP01130 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LDLRP01130 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
LDLRP01130 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.24■□□□□ 0.67
LDLRP01130 AP006294.2-201ENST00000641667 209 ntBASIC19.24■□□□□ 0.67
LDLRP01130 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.24■□□□□ 0.67
LDLRP01130 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.24■□□□□ 0.67
LDLRP01130 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LDLRP01130 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LDLRP01130 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LDLRP01130 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
LDLRP01130 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LDLRP01130 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
LDLRP01130 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.23■□□□□ 0.67
LDLRP01130 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LDLRP01130 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.23■□□□□ 0.67
LDLRP01130 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LDLRP01130 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LDLRP01130 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
LDLRP01130 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
LDLRP01130 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
LDLRP01130 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LDLRP01130 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
LDLRP01130 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LDLRP01130 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LDLRP01130 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.23■□□□□ 0.67
LDLRP01130 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.23■□□□□ 0.67
LDLRP01130 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LDLRP01130 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LDLRP01130 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LDLRP01130 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
LDLRP01130 AC005224.4-201ENST00000583262 1652 ntBASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms