Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC19.06■□□□□ 0.64
CACNA1AO00555 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC19.06■□□□□ 0.64
CACNA1AO00555 AC023632.3-201ENST00000521633 145 ntBASIC19.06■□□□□ 0.64
CACNA1AO00555 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC19.06■□□□□ 0.64
CACNA1AO00555 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CACNA1AO00555 TERC-201ENST00000602385 541 ntBASIC19.06■□□□□ 0.64
CACNA1AO00555 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC19.06■□□□□ 0.64
CACNA1AO00555 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.06■□□□□ 0.64
CACNA1AO00555 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CACNA1AO00555 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CACNA1AO00555 KRT8P8-201ENST00000434750 1448 ntBASIC19.06■□□□□ 0.64
CACNA1AO00555 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
CACNA1AO00555 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.06■□□□□ 0.64
CACNA1AO00555 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC19.06■□□□□ 0.64
CACNA1AO00555 AL121749.1-202ENST00000609313 2153 ntBASIC19.05■□□□□ 0.64
CACNA1AO00555 AC138932.3-201ENST00000567634 1902 ntBASIC19.05■□□□□ 0.64
CACNA1AO00555 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CACNA1AO00555 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.05■□□□□ 0.64
CACNA1AO00555 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
CACNA1AO00555 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC19.05■□□□□ 0.64
CACNA1AO00555 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CACNA1AO00555 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CACNA1AO00555 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
CACNA1AO00555 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC19.05■□□□□ 0.64
CACNA1AO00555 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CACNA1AO00555 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CACNA1AO00555 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC19.05■□□□□ 0.64
CACNA1AO00555 COX10-202ENST00000429152 875 ntTSL 2 BASIC19.05■□□□□ 0.64
CACNA1AO00555 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC19.05■□□□□ 0.64
CACNA1AO00555 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CACNA1AO00555 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1AO00555 KRT18P1-202ENST00000452408 1331 ntBASIC19.04■□□□□ 0.64
CACNA1AO00555 AC092865.5-201ENST00000545435 363 ntBASIC19.04■□□□□ 0.64
CACNA1AO00555 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC19.04■□□□□ 0.64
CACNA1AO00555 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1AO00555 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.04■□□□□ 0.64
CACNA1AO00555 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1AO00555 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1AO00555 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
CACNA1AO00555 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1AO00555 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC19.04■□□□□ 0.64
CACNA1AO00555 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC19.04■□□□□ 0.64
CACNA1AO00555 C1QL1P1-201ENST00000568105 661 ntBASIC19.04■□□□□ 0.64
CACNA1AO00555 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC19.03■□□□□ 0.64
CACNA1AO00555 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC19.03■□□□□ 0.64
CACNA1AO00555 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.03■□□□□ 0.64
CACNA1AO00555 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.03■□□□□ 0.64
CACNA1AO00555 TSPY12P-201ENST00000421279 868 ntBASIC19.03■□□□□ 0.64
CACNA1AO00555 AC079781.3-201ENST00000449110 356 ntBASIC19.03■□□□□ 0.64
CACNA1AO00555 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CACNA1AO00555 CALM3-211ENST00000598871 561 ntTSL 4 BASIC19.03■□□□□ 0.64
CACNA1AO00555 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CACNA1AO00555 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC19.03■□□□□ 0.64
CACNA1AO00555 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CACNA1AO00555 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CACNA1AO00555 ABCB10P4-201ENST00000566803 2184 ntBASIC19.03■□□□□ 0.64
CACNA1AO00555 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CACNA1AO00555 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CACNA1AO00555 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC19.03■□□□□ 0.64
CACNA1AO00555 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CACNA1AO00555 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC19.03■□□□□ 0.64
CACNA1AO00555 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC19.03■□□□□ 0.64
CACNA1AO00555 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CACNA1AO00555 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CACNA1AO00555 MIR3197-201ENST00000582241 73 ntBASIC19.03■□□□□ 0.64
CACNA1AO00555 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC19.03■□□□□ 0.64
CACNA1AO00555 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
CACNA1AO00555 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
CACNA1AO00555 MRPL3P1-201ENST00000400109 1033 ntBASIC19.02■□□□□ 0.64
CACNA1AO00555 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.02■□□□□ 0.64
CACNA1AO00555 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
CACNA1AO00555 AC140113.3-201ENST00000605663 199 ntBASIC19.02■□□□□ 0.64
CACNA1AO00555 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CACNA1AO00555 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC19.02■□□□□ 0.64
CACNA1AO00555 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC19.02■□□□□ 0.63
CACNA1AO00555 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC19.02■□□□□ 0.63
CACNA1AO00555 PMS2P2-201ENST00000425039 1128 ntBASIC19.01■□□□□ 0.63
CACNA1AO00555 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC19.01■□□□□ 0.63
CACNA1AO00555 RNA5SP419-201ENST00000515908 135 ntBASIC19.01■□□□□ 0.63
CACNA1AO00555 ZNF444P1-201ENST00000559497 298 ntBASIC19.01■□□□□ 0.63
CACNA1AO00555 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1AO00555 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1AO00555 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1AO00555 AF228730.7-201ENST00000641842 219 ntBASIC19.01■□□□□ 0.63
CACNA1AO00555 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1AO00555 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1AO00555 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1AO00555 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1AO00555 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1AO00555 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1AO00555 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CACNA1AO00555 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC19.01■□□□□ 0.63
CACNA1AO00555 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1AO00555 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1AO00555 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CACNA1AO00555 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
CACNA1AO00555 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CACNA1AO00555 PPIH-202ENST00000372549 327 ntTSL 3 BASIC19■□□□□ 0.63
CACNA1AO00555 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CACNA1AO00555 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms