Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
NKX3-1Q99801 MRPS18C-201ENST00000295491 1643 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
NKX3-1Q99801 UBE2V1-202ENST00000371657 1973 ntTSL 4 BASIC6.49□□□□□ -1.37
NKX3-1Q99801 NF1P7-201ENST00000612076 1530 ntBASIC6.49□□□□□ -1.37
NKX3-1Q99801 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC6.49□□□□□ -1.37
NKX3-1Q99801 BTBD7-208ENST00000555525 2328 ntTSL 5 BASIC6.49□□□□□ -1.37
NKX3-1Q99801 AC022819.1-201ENST00000563495 3910 ntBASIC6.49□□□□□ -1.37
NKX3-1Q99801 AL034417.4-202ENST00000642135 2236 ntBASIC6.49□□□□□ -1.37
NKX3-1Q99801 DOCK4-216ENST00000494651 3282 ntTSL 5 BASIC6.49□□□□□ -1.37
NKX3-1Q99801 ENSA-201ENST00000271690 2818 ntAPPRIS ALT1 TSL 1 (best) BASIC6.49□□□□□ -1.37
NKX3-1Q99801 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 ARMCX5-202ENST00000372742 2647 ntAPPRIS P1 TSL 2 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 LDB2-216ENST00000515064 2295 ntAPPRIS ALT1 TSL 2 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
NKX3-1Q99801 AL358394.2-201ENST00000427229 3637 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
NKX3-1Q99801 CHURC1-208ENST00000607599 3615 ntTSL 2 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 HELLS-206ENST00000394045 2699 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
NKX3-1Q99801 AC061975.7-201ENST00000592016 2692 ntBASIC6.48□□□□□ -1.37
NKX3-1Q99801 BEST3-212ENST00000553096 2929 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
NKX3-1Q99801 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 GDNF-202ENST00000344622 3655 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
NKX3-1Q99801 RND3-201ENST00000263895 2711 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
NKX3-1Q99801 AC092807.3-203ENST00000467530 2745 ntTSL 2 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 AL138847.1-201ENST00000258651 546 ntBASIC6.48□□□□□ -1.37
NKX3-1Q99801 CST13P-201ENST00000376992 428 ntBASIC6.48□□□□□ -1.37
NKX3-1Q99801 PHBP1-201ENST00000392260 808 ntBASIC6.48□□□□□ -1.37
NKX3-1Q99801 MAML3-201ENST00000398940 831 ntTSL 5 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 IGLC6-201ENST00000410078 317 ntBASIC6.48□□□□□ -1.37
NKX3-1Q99801 AC023141.10-201ENST00000415634 200 ntBASIC6.48□□□□□ -1.37
NKX3-1Q99801 AC010983.1-201ENST00000418387 1028 ntTSL 5 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 YBX1P8-201ENST00000421881 943 ntBASIC6.48□□□□□ -1.37
NKX3-1Q99801 SLIT1-AS1-201ENST00000424428 689 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
NKX3-1Q99801 AC006013.1-201ENST00000424888 758 ntTSL 3 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 RPL19P21-201ENST00000424919 591 ntBASIC6.48□□□□□ -1.37
NKX3-1Q99801 GAPDHP32-201ENST00000433816 998 ntBASIC6.48□□□□□ -1.37
NKX3-1Q99801 LINC02549-201ENST00000445346 674 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
NKX3-1Q99801 AL031963.1-201ENST00000447644 695 ntTSL 3 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 AL031736.1-201ENST00000449688 618 ntBASIC6.48□□□□□ -1.37
NKX3-1Q99801 CASK-AS1-201ENST00000451126 515 ntTSL 2 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 AC098828.2-201ENST00000452342 573 ntTSL 2 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 VN1R6P-201ENST00000458417 907 ntBASIC6.48□□□□□ -1.37
NKX3-1Q99801 AC139769.1-201ENST00000471224 1001 ntTSL 3 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 IGKV1-39-201ENST00000498574 398 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 AC093821.1-201ENST00000503950 539 ntTSL 4 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 AC022973.2-201ENST00000520146 549 ntTSL 4 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 OVCH1-AS1-201ENST00000549411 743 ntTSL 3 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 SRMP2-201ENST00000553832 916 ntBASIC6.48□□□□□ -1.37
NKX3-1Q99801 AL132719.1-201ENST00000554515 423 ntTSL 3 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 AL591767.1-201ENST00000557160 568 ntTSL 4 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 GNG2-215ENST00000557376 573 ntTSL 4 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 AC005154.1-225ENST00000581665 564 ntTSL 4 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 AC060766.6-201ENST00000589099 394 ntTSL 3 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 AP001269.1-201ENST00000592820 528 ntTSL 4 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 AC008635.1-201ENST00000600716 562 ntTSL 4 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 MILR1-202ENST00000612535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC6.48□□□□□ -1.37
NKX3-1Q99801 FAM184A-213ENST00000617072 1251 ntTSL 2 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 PTP4A1-206ENST00000627002 447 ntTSL 5 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 AL138924.1-201ENST00000629067 415 ntTSL 3 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC6.48□□□□□ -1.37
NKX3-1Q99801 GNPAT-201ENST00000366647 2643 ntAPPRIS P2 TSL 1 (best) BASIC6.48□□□□□ -1.37
NKX3-1Q99801 BRCC3-203ENST00000369459 2641 ntTSL 5 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 AL162456.1-201ENST00000634535 2006 ntBASIC6.48□□□□□ -1.37
NKX3-1Q99801 EEF1A1P4-201ENST00000359165 1405 ntBASIC6.48□□□□□ -1.37
NKX3-1Q99801 C8orf34-208ENST00000523686 1948 ntAPPRIS ALT2 TSL 2 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 RACGAP1-221ENST00000551016 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
NKX3-1Q99801 DMD-211ENST00000378707 7410 ntTSL 5 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 CD96-201ENST00000283285 4324 ntAPPRIS P4 TSL 1 (best) BASIC6.48□□□□□ -1.37
NKX3-1Q99801 AC132219.2-201ENST00000624416 2327 ntBASIC6.48□□□□□ -1.37
NKX3-1Q99801 DMC1-203ENST00000428462 2082 ntTSL 2 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 ZNF121-201ENST00000320451 1563 ntAPPRIS P1 TSL 3 BASIC6.48□□□□□ -1.37
NKX3-1Q99801 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
NKX3-1Q99801 AL391262.1-201ENST00000556558 1992 ntBASIC6.48□□□□□ -1.37
NKX3-1Q99801 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
NKX3-1Q99801 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
NKX3-1Q99801 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC6.47□□□□□ -1.37
NKX3-1Q99801 OR7E11P-202ENST00000642027 1491 ntBASIC6.47□□□□□ -1.37
NKX3-1Q99801 MARK2P4-201ENST00000503381 2380 ntBASIC6.47□□□□□ -1.37
NKX3-1Q99801 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC6.47□□□□□ -1.37
NKX3-1Q99801 IL2RA-203ENST00000379959 3176 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
NKX3-1Q99801 ARHGAP42P4-201ENST00000549782 2934 ntBASIC6.47□□□□□ -1.37
NKX3-1Q99801 CABYR-206ENST00000463087 1792 ntAPPRIS P4 TSL 5 BASIC6.47□□□□□ -1.37
NKX3-1Q99801 CCR6-202ENST00000349984 2980 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
NKX3-1Q99801 ZNF841-201ENST00000389534 3503 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
NKX3-1Q99801 CENPN-205ENST00000439957 1699 ntTSL 2 BASIC6.47□□□□□ -1.37
NKX3-1Q99801 OR9K2-201ENST00000305377 1122 ntBASIC6.47□□□□□ -1.37
NKX3-1Q99801 OR4A16-201ENST00000314721 1081 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
NKX3-1Q99801 HBS1L-202ENST00000367820 638 ntTSL 3 BASIC6.47□□□□□ -1.37
NKX3-1Q99801 SP140-202ENST00000373645 814 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
NKX3-1Q99801 U3.31-201ENST00000408113 216 ntBASIC6.47□□□□□ -1.37
NKX3-1Q99801 RPL34P19-201ENST00000415903 342 ntBASIC6.47□□□□□ -1.37
NKX3-1Q99801 RPL4P4-201ENST00000422486 1284 ntBASIC6.47□□□□□ -1.37
NKX3-1Q99801 VN1R35P-201ENST00000428102 693 ntBASIC6.47□□□□□ -1.37
NKX3-1Q99801 ECHDC1-207ENST00000430841 1009 ntAPPRIS P3 TSL 5 BASIC6.47□□□□□ -1.37
NKX3-1Q99801 AC007365.1-201ENST00000439964 627 ntTSL 2 BASIC6.47□□□□□ -1.37
NKX3-1Q99801 AL121885.2-201ENST00000440255 819 ntTSL 3 BASIC6.47□□□□□ -1.37
NKX3-1Q99801 AC239860.1-201ENST00000444680 1270 ntBASIC6.47□□□□□ -1.37
NKX3-1Q99801 AC114488.2-222ENST00000445166 362 ntTSL 3 BASIC6.47□□□□□ -1.37
NKX3-1Q99801 LINC00331-201ENST00000446391 376 ntTSL 5 BASIC6.47□□□□□ -1.37
NKX3-1Q99801 AL591438.2-201ENST00000452635 691 ntBASIC6.47□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms