Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PCDHGA3Q9Y5H0 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
PCDHGA3Q9Y5H0 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
PCDHGA3Q9Y5H0 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
PCDHGA3Q9Y5H0 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PCDHGA3Q9Y5H0 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
PCDHGA3Q9Y5H0 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PCDHGA3Q9Y5H0 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
PCDHGA3Q9Y5H0 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.47■□□□□ 0.71
PCDHGA3Q9Y5H0 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.47■□□□□ 0.71
PCDHGA3Q9Y5H0 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
PCDHGA3Q9Y5H0 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PCDHGA3Q9Y5H0 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC19.47■□□□□ 0.71
PCDHGA3Q9Y5H0 AC087633.2-202ENST00000565166 1439 ntBASIC19.47■□□□□ 0.71
PCDHGA3Q9Y5H0 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PCDHGA3Q9Y5H0 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.47■□□□□ 0.71
PCDHGA3Q9Y5H0 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
PCDHGA3Q9Y5H0 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
PCDHGA3Q9Y5H0 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
PCDHGA3Q9Y5H0 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
PCDHGA3Q9Y5H0 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PCDHGA3Q9Y5H0 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.46■□□□□ 0.71
PCDHGA3Q9Y5H0 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCDHGA3Q9Y5H0 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PCDHGA3Q9Y5H0 PGM5P4-201ENST00000421970 445 ntBASIC19.46■□□□□ 0.71
PCDHGA3Q9Y5H0 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
PCDHGA3Q9Y5H0 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC19.46■□□□□ 0.71
PCDHGA3Q9Y5H0 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
PCDHGA3Q9Y5H0 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC19.46■□□□□ 0.71
PCDHGA3Q9Y5H0 SPIB-206ENST00000596074 847 ntTSL 2 BASIC19.46■□□□□ 0.71
PCDHGA3Q9Y5H0 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC19.46■□□□□ 0.71
PCDHGA3Q9Y5H0 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PCDHGA3Q9Y5H0 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.46■□□□□ 0.71
PCDHGA3Q9Y5H0 Z98882.1-201ENST00000622160 2253 ntBASIC19.46■□□□□ 0.71
PCDHGA3Q9Y5H0 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.46■□□□□ 0.71
PCDHGA3Q9Y5H0 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCDHGA3Q9Y5H0 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
PCDHGA3Q9Y5H0 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCDHGA3Q9Y5H0 FEM1AP4-201ENST00000443167 1987 ntBASIC19.46■□□□□ 0.71
PCDHGA3Q9Y5H0 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC19.46■□□□□ 0.71
PCDHGA3Q9Y5H0 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.45■□□□□ 0.7
PCDHGA3Q9Y5H0 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHGA3Q9Y5H0 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHGA3Q9Y5H0 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHGA3Q9Y5H0 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHGA3Q9Y5H0 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHGA3Q9Y5H0 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHGA3Q9Y5H0 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHGA3Q9Y5H0 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
PCDHGA3Q9Y5H0 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHGA3Q9Y5H0 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHGA3Q9Y5H0 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHGA3Q9Y5H0 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
PCDHGA3Q9Y5H0 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHGA3Q9Y5H0 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC19.45■□□□□ 0.7
PCDHGA3Q9Y5H0 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHGA3Q9Y5H0 KLF2-202ENST00000592003 564 ntTSL 3 BASIC19.45■□□□□ 0.7
PCDHGA3Q9Y5H0 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
PCDHGA3Q9Y5H0 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.45■□□□□ 0.7
PCDHGA3Q9Y5H0 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHGA3Q9Y5H0 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
PCDHGA3Q9Y5H0 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHGA3Q9Y5H0 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
PCDHGA3Q9Y5H0 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
PCDHGA3Q9Y5H0 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHGA3Q9Y5H0 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHGA3Q9Y5H0 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
PCDHGA3Q9Y5H0 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
PCDHGA3Q9Y5H0 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHGA3Q9Y5H0 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC19.44■□□□□ 0.7
PCDHGA3Q9Y5H0 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHGA3Q9Y5H0 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
PCDHGA3Q9Y5H0 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.44■□□□□ 0.7
PCDHGA3Q9Y5H0 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHGA3Q9Y5H0 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHGA3Q9Y5H0 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHGA3Q9Y5H0 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
PCDHGA3Q9Y5H0 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHGA3Q9Y5H0 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.44■□□□□ 0.7
PCDHGA3Q9Y5H0 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.44■□□□□ 0.7
PCDHGA3Q9Y5H0 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.44■□□□□ 0.7
PCDHGA3Q9Y5H0 Z99916.2-201ENST00000604037 246 ntBASIC19.44■□□□□ 0.7
PCDHGA3Q9Y5H0 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHGA3Q9Y5H0 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
PCDHGA3Q9Y5H0 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.44■□□□□ 0.7
PCDHGA3Q9Y5H0 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHGA3Q9Y5H0 AC007952.6-201ENST00000573168 2673 ntBASIC19.44■□□□□ 0.7
PCDHGA3Q9Y5H0 AC003957.1-201ENST00000625108 2673 ntBASIC19.44■□□□□ 0.7
PCDHGA3Q9Y5H0 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHGA3Q9Y5H0 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHGA3Q9Y5H0 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHGA3Q9Y5H0 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.43■□□□□ 0.7
PCDHGA3Q9Y5H0 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHGA3Q9Y5H0 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHGA3Q9Y5H0 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHGA3Q9Y5H0 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.43■□□□□ 0.7
PCDHGA3Q9Y5H0 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.43■□□□□ 0.7
PCDHGA3Q9Y5H0 GGT1-206ENST00000404223 952 ntTSL 2 BASIC19.43■□□□□ 0.7
PCDHGA3Q9Y5H0 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.43■□□□□ 0.7
PCDHGA3Q9Y5H0 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms