Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RHBDD3Q9Y3P4 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RHBDD3Q9Y3P4 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RHBDD3Q9Y3P4 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RHBDD3Q9Y3P4 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC17.55■□□□□ 0.4
RHBDD3Q9Y3P4 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
RHBDD3Q9Y3P4 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RHBDD3Q9Y3P4 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RHBDD3Q9Y3P4 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
RHBDD3Q9Y3P4 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.54■□□□□ 0.4
RHBDD3Q9Y3P4 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
RHBDD3Q9Y3P4 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RHBDD3Q9Y3P4 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC17.54■□□□□ 0.4
RHBDD3Q9Y3P4 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
RHBDD3Q9Y3P4 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
RHBDD3Q9Y3P4 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RHBDD3Q9Y3P4 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RHBDD3Q9Y3P4 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
RHBDD3Q9Y3P4 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC17.54■□□□□ 0.4
RHBDD3Q9Y3P4 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
RHBDD3Q9Y3P4 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC17.54■□□□□ 0.4
RHBDD3Q9Y3P4 MFSD11-216ENST00000590393 1141 ntBASIC17.54■□□□□ 0.4
RHBDD3Q9Y3P4 AL591742.1-201ENST00000604433 565 ntBASIC17.54■□□□□ 0.4
RHBDD3Q9Y3P4 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC17.54■□□□□ 0.4
RHBDD3Q9Y3P4 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC17.54■□□□□ 0.4
RHBDD3Q9Y3P4 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
RHBDD3Q9Y3P4 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RHBDD3Q9Y3P4 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC17.54■□□□□ 0.4
RHBDD3Q9Y3P4 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC17.54■□□□□ 0.4
RHBDD3Q9Y3P4 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
RHBDD3Q9Y3P4 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RHBDD3Q9Y3P4 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RHBDD3Q9Y3P4 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC17.53■□□□□ 0.4
RHBDD3Q9Y3P4 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RHBDD3Q9Y3P4 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC17.53■□□□□ 0.4
RHBDD3Q9Y3P4 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC17.53■□□□□ 0.4
RHBDD3Q9Y3P4 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RHBDD3Q9Y3P4 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
RHBDD3Q9Y3P4 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
RHBDD3Q9Y3P4 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RHBDD3Q9Y3P4 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RHBDD3Q9Y3P4 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC17.53■□□□□ 0.4
RHBDD3Q9Y3P4 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
RHBDD3Q9Y3P4 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC17.53■□□□□ 0.4
RHBDD3Q9Y3P4 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC17.53■□□□□ 0.4
RHBDD3Q9Y3P4 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RHBDD3Q9Y3P4 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
RHBDD3Q9Y3P4 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RHBDD3Q9Y3P4 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC17.53■□□□□ 0.4
RHBDD3Q9Y3P4 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
RHBDD3Q9Y3P4 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC17.53■□□□□ 0.4
RHBDD3Q9Y3P4 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
RHBDD3Q9Y3P4 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
RHBDD3Q9Y3P4 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC17.52■□□□□ 0.4
RHBDD3Q9Y3P4 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
RHBDD3Q9Y3P4 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RHBDD3Q9Y3P4 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC17.52■□□□□ 0.4
RHBDD3Q9Y3P4 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RHBDD3Q9Y3P4 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC17.52■□□□□ 0.4
RHBDD3Q9Y3P4 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
RHBDD3Q9Y3P4 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
RHBDD3Q9Y3P4 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RHBDD3Q9Y3P4 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC17.52■□□□□ 0.4
RHBDD3Q9Y3P4 AC006015.1-201ENST00000429970 570 ntBASIC17.52■□□□□ 0.4
RHBDD3Q9Y3P4 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
RHBDD3Q9Y3P4 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC17.52■□□□□ 0.4
RHBDD3Q9Y3P4 AC011767.1-201ENST00000617410 1153 ntBASIC17.52■□□□□ 0.4
RHBDD3Q9Y3P4 AC013268.1-206ENST00000638368 961 ntBASIC17.52■□□□□ 0.4
RHBDD3Q9Y3P4 AC112229.1-201ENST00000639295 961 ntBASIC17.52■□□□□ 0.4
RHBDD3Q9Y3P4 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC17.52■□□□□ 0.4
RHBDD3Q9Y3P4 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
RHBDD3Q9Y3P4 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC17.52■□□□□ 0.4
RHBDD3Q9Y3P4 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
RHBDD3Q9Y3P4 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RHBDD3Q9Y3P4 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
RHBDD3Q9Y3P4 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
RHBDD3Q9Y3P4 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
RHBDD3Q9Y3P4 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.52■□□□□ 0.39
RHBDD3Q9Y3P4 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
RHBDD3Q9Y3P4 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.39
RHBDD3Q9Y3P4 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RHBDD3Q9Y3P4 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.51■□□□□ 0.39
RHBDD3Q9Y3P4 ME3-201ENST00000323418 1068 ntTSL 5 BASIC17.51■□□□□ 0.39
RHBDD3Q9Y3P4 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RHBDD3Q9Y3P4 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RHBDD3Q9Y3P4 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.51■□□□□ 0.39
RHBDD3Q9Y3P4 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
RHBDD3Q9Y3P4 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
RHBDD3Q9Y3P4 VMO1-204ENST00000441199 741 ntTSL 2 BASIC17.51■□□□□ 0.39
RHBDD3Q9Y3P4 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC17.51■□□□□ 0.39
RHBDD3Q9Y3P4 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC17.51■□□□□ 0.39
RHBDD3Q9Y3P4 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RHBDD3Q9Y3P4 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
RHBDD3Q9Y3P4 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC17.51■□□□□ 0.39
RHBDD3Q9Y3P4 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RHBDD3Q9Y3P4 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC17.51■□□□□ 0.39
RHBDD3Q9Y3P4 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RHBDD3Q9Y3P4 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
RHBDD3Q9Y3P4 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC17.51■□□□□ 0.39
RHBDD3Q9Y3P4 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms