Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
COL17A1Q9UMD9 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
COL17A1Q9UMD9 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC30.67■■■□□ 2.5
COL17A1Q9UMD9 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
COL17A1Q9UMD9 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC30.67■■■□□ 2.5
COL17A1Q9UMD9 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC30.67■■■□□ 2.5
COL17A1Q9UMD9 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
COL17A1Q9UMD9 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
COL17A1Q9UMD9 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC30.66■■■□□ 2.5
COL17A1Q9UMD9 KRT18P16-201ENST00000510337 1294 ntBASIC30.66■■■□□ 2.5
COL17A1Q9UMD9 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC30.66■■■□□ 2.5
COL17A1Q9UMD9 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
COL17A1Q9UMD9 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC30.66■■■□□ 2.5
COL17A1Q9UMD9 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC30.66■■■□□ 2.5
COL17A1Q9UMD9 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC30.65■■■□□ 2.5
COL17A1Q9UMD9 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
COL17A1Q9UMD9 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC30.65■■■□□ 2.5
COL17A1Q9UMD9 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC30.65■■■□□ 2.5
COL17A1Q9UMD9 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
COL17A1Q9UMD9 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC30.65■■■□□ 2.5
COL17A1Q9UMD9 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC30.65■■■□□ 2.5
COL17A1Q9UMD9 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC30.65■■■□□ 2.5
COL17A1Q9UMD9 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC30.65■■■□□ 2.5
COL17A1Q9UMD9 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC30.64■■■□□ 2.5
COL17A1Q9UMD9 FDX2-206ENST00000492239 773 ntTSL 2 BASIC30.64■■■□□ 2.5
COL17A1Q9UMD9 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
COL17A1Q9UMD9 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
COL17A1Q9UMD9 AC069148.1-201ENST00000608741 768 ntBASIC30.64■■■□□ 2.5
COL17A1Q9UMD9 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC30.64■■■□□ 2.5
COL17A1Q9UMD9 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC30.64■■■□□ 2.5
COL17A1Q9UMD9 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC30.64■■■□□ 2.5
COL17A1Q9UMD9 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC30.64■■■□□ 2.5
COL17A1Q9UMD9 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
COL17A1Q9UMD9 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
COL17A1Q9UMD9 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
COL17A1Q9UMD9 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC30.64■■■□□ 2.49
COL17A1Q9UMD9 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC30.63■■■□□ 2.49
COL17A1Q9UMD9 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
COL17A1Q9UMD9 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC30.63■■■□□ 2.49
COL17A1Q9UMD9 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC30.63■■■□□ 2.49
COL17A1Q9UMD9 AC092647.4-201ENST00000457211 535 ntBASIC30.63■■■□□ 2.49
COL17A1Q9UMD9 PTK2-216ENST00000519881 863 ntTSL 3 BASIC30.63■■■□□ 2.49
COL17A1Q9UMD9 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC30.63■■■□□ 2.49
COL17A1Q9UMD9 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC30.63■■■□□ 2.49
COL17A1Q9UMD9 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
COL17A1Q9UMD9 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
COL17A1Q9UMD9 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
COL17A1Q9UMD9 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC30.63■■■□□ 2.49
COL17A1Q9UMD9 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC30.63■■■□□ 2.49
COL17A1Q9UMD9 AC011558.1-201ENST00000623459 338 ntBASIC30.63■■■□□ 2.49
COL17A1Q9UMD9 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
COL17A1Q9UMD9 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC30.62■■■□□ 2.49
COL17A1Q9UMD9 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
COL17A1Q9UMD9 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
COL17A1Q9UMD9 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC30.62■■■□□ 2.49
COL17A1Q9UMD9 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC30.62■■■□□ 2.49
COL17A1Q9UMD9 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
COL17A1Q9UMD9 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC30.62■■■□□ 2.49
COL17A1Q9UMD9 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
COL17A1Q9UMD9 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC30.61■■■□□ 2.49
COL17A1Q9UMD9 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
COL17A1Q9UMD9 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
COL17A1Q9UMD9 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
COL17A1Q9UMD9 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC30.61■■■□□ 2.49
COL17A1Q9UMD9 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
COL17A1Q9UMD9 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC30.61■■■□□ 2.49
COL17A1Q9UMD9 COX11P1-201ENST00000489116 835 ntBASIC30.61■■■□□ 2.49
COL17A1Q9UMD9 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
COL17A1Q9UMD9 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC30.6■■■□□ 2.49
COL17A1Q9UMD9 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC30.6■■■□□ 2.49
COL17A1Q9UMD9 AP000593.1-201ENST00000393668 712 ntBASIC30.6■■■□□ 2.49
COL17A1Q9UMD9 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC30.6■■■□□ 2.49
COL17A1Q9UMD9 KLK8-205ENST00000593490 267 ntTSL 3 BASIC30.6■■■□□ 2.49
COL17A1Q9UMD9 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC30.6■■■□□ 2.49
COL17A1Q9UMD9 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC30.6■■■□□ 2.49
COL17A1Q9UMD9 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
COL17A1Q9UMD9 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
COL17A1Q9UMD9 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
COL17A1Q9UMD9 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
COL17A1Q9UMD9 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC30.59■■■□□ 2.49
COL17A1Q9UMD9 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC30.59■■■□□ 2.49
COL17A1Q9UMD9 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC30.59■■■□□ 2.49
COL17A1Q9UMD9 AC097488.1-201ENST00000507834 756 ntBASIC30.59■■■□□ 2.49
COL17A1Q9UMD9 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC30.59■■■□□ 2.49
COL17A1Q9UMD9 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC30.59■■■□□ 2.49
COL17A1Q9UMD9 AL445675.2-201ENST00000620291 557 ntBASIC30.59■■■□□ 2.49
COL17A1Q9UMD9 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
COL17A1Q9UMD9 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
COL17A1Q9UMD9 STK25-205ENST00000405883 1904 ntTSL 2 BASIC30.58■■■□□ 2.49
COL17A1Q9UMD9 CASK-201ENST00000378154 2494 ntTSL 5 BASIC30.58■■■□□ 2.49
COL17A1Q9UMD9 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
COL17A1Q9UMD9 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC30.58■■■□□ 2.49
COL17A1Q9UMD9 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC30.58■■■□□ 2.49
COL17A1Q9UMD9 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
COL17A1Q9UMD9 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
COL17A1Q9UMD9 AL671277.2-201ENST00000458060 996 ntBASIC30.58■■■□□ 2.49
COL17A1Q9UMD9 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC30.58■■■□□ 2.49
COL17A1Q9UMD9 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC30.58■■■□□ 2.49
COL17A1Q9UMD9 AC130371.2-201ENST00000619443 611 ntBASIC30.58■■■□□ 2.49
COL17A1Q9UMD9 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms