Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLCF1Q9UBD9 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLCF1Q9UBD9 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLCF1Q9UBD9 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC17.88■□□□□ 0.45
CLCF1Q9UBD9 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLCF1Q9UBD9 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLCF1Q9UBD9 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC17.88■□□□□ 0.45
CLCF1Q9UBD9 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLCF1Q9UBD9 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CLCF1Q9UBD9 AC239809.2-201ENST00000415381 517 ntBASIC17.88■□□□□ 0.45
CLCF1Q9UBD9 AC133681.1-201ENST00000465482 601 ntBASIC17.88■□□□□ 0.45
CLCF1Q9UBD9 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.88■□□□□ 0.45
CLCF1Q9UBD9 LY6E-205ENST00000519611 635 ntTSL 3 BASIC17.88■□□□□ 0.45
CLCF1Q9UBD9 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC17.88■□□□□ 0.45
CLCF1Q9UBD9 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.88■□□□□ 0.45
CLCF1Q9UBD9 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.88■□□□□ 0.45
CLCF1Q9UBD9 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC17.88■□□□□ 0.45
CLCF1Q9UBD9 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC17.88■□□□□ 0.45
CLCF1Q9UBD9 AC124016.1-201ENST00000609552 612 ntBASIC17.88■□□□□ 0.45
CLCF1Q9UBD9 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
CLCF1Q9UBD9 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC17.88■□□□□ 0.45
CLCF1Q9UBD9 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CLCF1Q9UBD9 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 BID-203ENST00000399765 1879 ntTSL 2 BASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 HLA-G-202ENST00000376815 851 ntBASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 HLA-G-203ENST00000376818 1127 ntBASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 AC008550.1-201ENST00000511500 884 ntBASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 AL031963.3-201ENST00000606441 850 ntBASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 AL023875.1-201ENST00000640777 796 ntBASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC17.87■□□□□ 0.45
CLCF1Q9UBD9 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLCF1Q9UBD9 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLCF1Q9UBD9 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
CLCF1Q9UBD9 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.86■□□□□ 0.45
CLCF1Q9UBD9 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.86■□□□□ 0.45
CLCF1Q9UBD9 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLCF1Q9UBD9 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC17.86■□□□□ 0.45
CLCF1Q9UBD9 RPS2P4-201ENST00000476944 856 ntBASIC17.86■□□□□ 0.45
CLCF1Q9UBD9 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.86■□□□□ 0.45
CLCF1Q9UBD9 MAX-217ENST00000557277 728 ntTSL 3 BASIC17.86■□□□□ 0.45
CLCF1Q9UBD9 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.86■□□□□ 0.45
CLCF1Q9UBD9 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.86■□□□□ 0.45
CLCF1Q9UBD9 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLCF1Q9UBD9 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLCF1Q9UBD9 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLCF1Q9UBD9 H19-201ENST00000411754 1788 ntTSL 5 BASIC17.86■□□□□ 0.45
CLCF1Q9UBD9 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLCF1Q9UBD9 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLCF1Q9UBD9 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC17.86■□□□□ 0.45
CLCF1Q9UBD9 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC17.86■□□□□ 0.45
CLCF1Q9UBD9 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
CLCF1Q9UBD9 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLCF1Q9UBD9 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLCF1Q9UBD9 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLCF1Q9UBD9 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
CLCF1Q9UBD9 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLCF1Q9UBD9 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLCF1Q9UBD9 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLCF1Q9UBD9 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLCF1Q9UBD9 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CLCF1Q9UBD9 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.85■□□□□ 0.45
CLCF1Q9UBD9 KRT8P20-201ENST00000423953 1409 ntBASIC17.85■□□□□ 0.45
CLCF1Q9UBD9 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLCF1Q9UBD9 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
CLCF1Q9UBD9 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CLCF1Q9UBD9 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC17.85■□□□□ 0.45
CLCF1Q9UBD9 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
CLCF1Q9UBD9 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLCF1Q9UBD9 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
CLCF1Q9UBD9 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC17.85■□□□□ 0.45
CLCF1Q9UBD9 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.85■□□□□ 0.45
CLCF1Q9UBD9 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC17.85■□□□□ 0.45
CLCF1Q9UBD9 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CLCF1Q9UBD9 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
CLCF1Q9UBD9 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
CLCF1Q9UBD9 AL121829.2-201ENST00000620908 328 ntBASIC17.85■□□□□ 0.45
CLCF1Q9UBD9 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CLCF1Q9UBD9 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLCF1Q9UBD9 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms