Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
DDX4Q9NQI0 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
DDX4Q9NQI0 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC23.82■■□□□ 1.4
DDX4Q9NQI0 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC23.82■■□□□ 1.4
DDX4Q9NQI0 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
DDX4Q9NQI0 MAX-217ENST00000557277 728 ntTSL 3 BASIC23.82■■□□□ 1.4
DDX4Q9NQI0 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC23.82■■□□□ 1.4
DDX4Q9NQI0 AL031963.3-201ENST00000606441 850 ntBASIC23.82■■□□□ 1.4
DDX4Q9NQI0 SNX21-213ENST00000614929 587 ntTSL 5 BASIC23.82■■□□□ 1.4
DDX4Q9NQI0 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
DDX4Q9NQI0 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
DDX4Q9NQI0 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
DDX4Q9NQI0 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
DDX4Q9NQI0 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC23.81■■□□□ 1.4
DDX4Q9NQI0 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
DDX4Q9NQI0 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
DDX4Q9NQI0 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
DDX4Q9NQI0 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
DDX4Q9NQI0 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
DDX4Q9NQI0 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
DDX4Q9NQI0 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC23.81■■□□□ 1.4
DDX4Q9NQI0 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC23.81■■□□□ 1.4
DDX4Q9NQI0 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
DDX4Q9NQI0 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC23.81■■□□□ 1.4
DDX4Q9NQI0 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC23.81■■□□□ 1.4
DDX4Q9NQI0 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
DDX4Q9NQI0 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
DDX4Q9NQI0 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
DDX4Q9NQI0 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC23.81■■□□□ 1.4
DDX4Q9NQI0 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
DDX4Q9NQI0 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
DDX4Q9NQI0 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
DDX4Q9NQI0 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
DDX4Q9NQI0 AC006128.1-201ENST00000624704 1661 ntBASIC23.8■■□□□ 1.4
DDX4Q9NQI0 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
DDX4Q9NQI0 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
DDX4Q9NQI0 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
DDX4Q9NQI0 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
DDX4Q9NQI0 TREX2-204ENST00000370212 861 ntTSL 5 BASIC23.8■■□□□ 1.4
DDX4Q9NQI0 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
DDX4Q9NQI0 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
DDX4Q9NQI0 KRT8P20-201ENST00000423953 1409 ntBASIC23.8■■□□□ 1.4
DDX4Q9NQI0 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
DDX4Q9NQI0 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC23.8■■□□□ 1.4
DDX4Q9NQI0 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
DDX4Q9NQI0 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC23.8■■□□□ 1.4
DDX4Q9NQI0 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
DDX4Q9NQI0 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC23.8■■□□□ 1.4
DDX4Q9NQI0 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC23.8■■□□□ 1.4
DDX4Q9NQI0 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC23.8■■□□□ 1.4
DDX4Q9NQI0 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC23.8■■□□□ 1.4
DDX4Q9NQI0 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC23.8■■□□□ 1.4
DDX4Q9NQI0 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
DDX4Q9NQI0 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
DDX4Q9NQI0 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
DDX4Q9NQI0 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC23.79■■□□□ 1.4
DDX4Q9NQI0 HLA-G-202ENST00000376815 851 ntBASIC23.79■■□□□ 1.4
DDX4Q9NQI0 HLA-G-203ENST00000376818 1127 ntBASIC23.79■■□□□ 1.4
DDX4Q9NQI0 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC23.79■■□□□ 1.4
DDX4Q9NQI0 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC23.79■■□□□ 1.4
DDX4Q9NQI0 FDX2-207ENST00000494368 584 ntTSL 4 BASIC23.79■■□□□ 1.4
DDX4Q9NQI0 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC23.79■■□□□ 1.4
DDX4Q9NQI0 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC23.79■■□□□ 1.4
DDX4Q9NQI0 RPS15-203ENST00000586096 570 ntTSL 2 BASIC23.79■■□□□ 1.4
DDX4Q9NQI0 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
DDX4Q9NQI0 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
DDX4Q9NQI0 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
DDX4Q9NQI0 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
DDX4Q9NQI0 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC23.79■■□□□ 1.4
DDX4Q9NQI0 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
DDX4Q9NQI0 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
DDX4Q9NQI0 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
DDX4Q9NQI0 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
DDX4Q9NQI0 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
DDX4Q9NQI0 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC23.78■■□□□ 1.4
DDX4Q9NQI0 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
DDX4Q9NQI0 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
DDX4Q9NQI0 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC23.78■■□□□ 1.4
DDX4Q9NQI0 AC087499.1-201ENST00000418141 1075 ntBASIC23.78■■□□□ 1.4
DDX4Q9NQI0 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC23.78■■□□□ 1.4
DDX4Q9NQI0 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC23.78■■□□□ 1.4
DDX4Q9NQI0 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC23.78■■□□□ 1.4
DDX4Q9NQI0 AC026471.5-201ENST00000615068 467 ntBASIC23.78■■□□□ 1.4
DDX4Q9NQI0 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
DDX4Q9NQI0 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC23.78■■□□□ 1.4
DDX4Q9NQI0 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC23.78■■□□□ 1.4
DDX4Q9NQI0 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC23.77■■□□□ 1.4
DDX4Q9NQI0 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC23.77■■□□□ 1.4
DDX4Q9NQI0 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
DDX4Q9NQI0 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC23.77■■□□□ 1.4
DDX4Q9NQI0 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC23.77■■□□□ 1.4
DDX4Q9NQI0 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC23.77■■□□□ 1.4
DDX4Q9NQI0 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC23.77■■□□□ 1.4
DDX4Q9NQI0 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC23.77■■□□□ 1.4
DDX4Q9NQI0 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
DDX4Q9NQI0 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC23.77■■□□□ 1.4
DDX4Q9NQI0 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
DDX4Q9NQI0 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
DDX4Q9NQI0 AC079834.2-201ENST00000609776 1949 ntBASIC23.76■■□□□ 1.39
DDX4Q9NQI0 KRT8P17-201ENST00000453110 1448 ntBASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms