Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 AL591742.1-201ENST00000604433 565 ntBASIC20.8■□□□□ 0.92
ATG4AQ8WYN0 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ATG4AQ8WYN0 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ATG4AQ8WYN0 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ATG4AQ8WYN0 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ATG4AQ8WYN0 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ATG4AQ8WYN0 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.79■□□□□ 0.92
ATG4AQ8WYN0 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.79■□□□□ 0.92
ATG4AQ8WYN0 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ATG4AQ8WYN0 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ATG4AQ8WYN0 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.79■□□□□ 0.92
ATG4AQ8WYN0 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ATG4AQ8WYN0 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.79■□□□□ 0.92
ATG4AQ8WYN0 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ATG4AQ8WYN0 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ATG4AQ8WYN0 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
ATG4AQ8WYN0 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
ATG4AQ8WYN0 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ATG4AQ8WYN0 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.78■□□□□ 0.92
ATG4AQ8WYN0 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.78■□□□□ 0.92
ATG4AQ8WYN0 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
ATG4AQ8WYN0 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ATG4AQ8WYN0 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ATG4AQ8WYN0 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ATG4AQ8WYN0 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
ATG4AQ8WYN0 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.78■□□□□ 0.92
ATG4AQ8WYN0 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ATG4AQ8WYN0 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ATG4AQ8WYN0 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.78■□□□□ 0.92
ATG4AQ8WYN0 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.78■□□□□ 0.92
ATG4AQ8WYN0 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.78■□□□□ 0.92
ATG4AQ8WYN0 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC20.78■□□□□ 0.92
ATG4AQ8WYN0 AC087623.3-201ENST00000607047 1098 ntBASIC20.78■□□□□ 0.92
ATG4AQ8WYN0 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
ATG4AQ8WYN0 RNF165-205ENST00000588679 2904 ntBASIC20.78■□□□□ 0.92
ATG4AQ8WYN0 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ATG4AQ8WYN0 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
ATG4AQ8WYN0 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.78■□□□□ 0.92
ATG4AQ8WYN0 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20.78■□□□□ 0.92
ATG4AQ8WYN0 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ATG4AQ8WYN0 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ATG4AQ8WYN0 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
ATG4AQ8WYN0 TMEM179-206ENST00000616017 1645 ntBASIC20.78■□□□□ 0.92
ATG4AQ8WYN0 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
ATG4AQ8WYN0 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.77■□□□□ 0.92
ATG4AQ8WYN0 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.77■□□□□ 0.92
ATG4AQ8WYN0 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ATG4AQ8WYN0 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
ATG4AQ8WYN0 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
ATG4AQ8WYN0 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.77■□□□□ 0.92
ATG4AQ8WYN0 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
ATG4AQ8WYN0 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
ATG4AQ8WYN0 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
ATG4AQ8WYN0 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ATG4AQ8WYN0 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ATG4AQ8WYN0 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.77■□□□□ 0.92
ATG4AQ8WYN0 AC034268.1-201ENST00000441047 882 ntBASIC20.77■□□□□ 0.92
ATG4AQ8WYN0 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.77■□□□□ 0.92
ATG4AQ8WYN0 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.77■□□□□ 0.92
ATG4AQ8WYN0 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.77■□□□□ 0.92
ATG4AQ8WYN0 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.77■□□□□ 0.92
ATG4AQ8WYN0 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.77■□□□□ 0.92
ATG4AQ8WYN0 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
ATG4AQ8WYN0 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
ATG4AQ8WYN0 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
ATG4AQ8WYN0 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.77■□□□□ 0.92
ATG4AQ8WYN0 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.77■□□□□ 0.92
ATG4AQ8WYN0 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.77■□□□□ 0.91
ATG4AQ8WYN0 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
ATG4AQ8WYN0 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ATG4AQ8WYN0 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ATG4AQ8WYN0 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ATG4AQ8WYN0 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ATG4AQ8WYN0 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
ATG4AQ8WYN0 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.76■□□□□ 0.91
ATG4AQ8WYN0 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
ATG4AQ8WYN0 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
ATG4AQ8WYN0 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ATG4AQ8WYN0 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ATG4AQ8WYN0 PGM5P4-201ENST00000421970 445 ntBASIC20.76■□□□□ 0.91
ATG4AQ8WYN0 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ATG4AQ8WYN0 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.76■□□□□ 0.91
ATG4AQ8WYN0 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.76■□□□□ 0.91
ATG4AQ8WYN0 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
ATG4AQ8WYN0 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ATG4AQ8WYN0 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ATG4AQ8WYN0 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
ATG4AQ8WYN0 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ATG4AQ8WYN0 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
ATG4AQ8WYN0 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ATG4AQ8WYN0 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.75■□□□□ 0.91
ATG4AQ8WYN0 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ATG4AQ8WYN0 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ATG4AQ8WYN0 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ATG4AQ8WYN0 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ATG4AQ8WYN0 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ATG4AQ8WYN0 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.75■□□□□ 0.91
ATG4AQ8WYN0 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.75■□□□□ 0.91
ATG4AQ8WYN0 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.75■□□□□ 0.91
ATG4AQ8WYN0 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms