Protein–RNA interactions for Protein: P53960

YNL040W, Putative alanyl-tRNA editing protein alaX, yeastyeast

Predicted RBP Predictions only

Length 456 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
YNL040WP53960 YAR053WYAR053W 297 nt0.96□□□□□ -2.26
YNL040WP53960 YOR108C-AYOR108C-A 210 nt0.96□□□□□ -2.26
YNL040WP53960 EAF1YDR359C 2949 nt0.96□□□□□ -2.26
YNL040WP53960 MMS4YBR098W 2076 nt0.96□□□□□ -2.26
YNL040WP53960 SLI15YBR156C 2097 nt0.96□□□□□ -2.26
YNL040WP53960 SLD3YGL113W 2007 nt0.96□□□□□ -2.26
YNL040WP53960 COG4YPR105C 2586 nt0.96□□□□□ -2.26
YNL040WP53960 SMC1YFL008W 3678 nt0.95□□□□□ -2.26
YNL040WP53960 APL3YBL037W 3078 nt0.95□□□□□ -2.26
YNL040WP53960 CSN9YDR179C 489 nt0.95□□□□□ -2.26
YNL040WP53960 YDR426CYDR426C 378 nt0.95□□□□□ -2.26
YNL040WP53960 YBL008W-AYBL008W-A 240 nt0.95□□□□□ -2.26
YNL040WP53960 YPR002C-AYPR002C-A 198 nt0.95□□□□□ -2.26
YNL040WP53960 YPR170W-AYPR170W-A 186 nt0.95□□□□□ -2.26
YNL040WP53960 FIG4YNL325C 2640 nt0.95□□□□□ -2.26
YNL040WP53960 CDC39YCR093W 6327 nt0.94□□□□□ -2.26
YNL040WP53960 tW(UCA)QtW(UCA)Q 74 nt0.94□□□□□ -2.26
YNL040WP53960 RPL38YLR325C 237 nt0.94□□□□□ -2.26
YNL040WP53960 YPL261CYPL261C 309 nt0.94□□□□□ -2.26
YNL040WP53960 YBR200W-AYBR200W-A 165 nt0.94□□□□□ -2.26
YNL040WP53960 SET3YKR029C 2256 nt0.94□□□□□ -2.26
YNL040WP53960 RAD34YDR314C 2079 nt0.93□□□□□ -2.26
YNL040WP53960 PAM16YJL104W 450 nt0.93□□□□□ -2.26
YNL040WP53960 YMR290W-AYMR290W-A 348 nt0.93□□□□□ -2.26
YNL040WP53960 YBR221W-AYBR221W-A 105 nt0.93□□□□□ -2.26
YNL040WP53960 PAU24YBR301W 363 nt0.93□□□□□ -2.26
YNL040WP53960 STO1YMR125W 2586 nt0.93□□□□□ -2.26
YNL040WP53960 YGR035CYGR035C 351 nt0.92□□□□□ -2.26
YNL040WP53960 PAU12YGR294W 363 nt0.92□□□□□ -2.26
YNL040WP53960 RIM20YOR275C 1986 nt0.92□□□□□ -2.26
YNL040WP53960 PDE2YOR360C 1581 nt0.91□□□□□ -2.26
YNL040WP53960 STB6YKL072W 2301 nt0.91□□□□□ -2.26
YNL040WP53960 MAM33YIL070C 801 nt0.91□□□□□ -2.26
YNL040WP53960 YLR334CYLR334C 381 nt0.91□□□□□ -2.26
YNL040WP53960 YPR012WYPR012W 255 nt0.91□□□□□ -2.26
YNL040WP53960 PKH2YOL100W 3246 nt0.91□□□□□ -2.26
YNL040WP53960 ALY2YJL084C 3141 nt0.9□□□□□ -2.27
YNL040WP53960 PCC1YKR095W-A 267 nt0.9□□□□□ -2.27
YNL040WP53960 BIL1YOR304C-A 231 nt0.9□□□□□ -2.27
YNL040WP53960 NIP100YPL174C 2607 nt0.9□□□□□ -2.27
YNL040WP53960 GPG1YGL121C 381 nt0.89□□□□□ -2.27
YNL040WP53960 YJR011CYJR011C 786 nt0.89□□□□□ -2.27
YNL040WP53960 YDL206WYDL206W 2289 nt0.89□□□□□ -2.27
YNL040WP53960 RPL35AYDL191W 363 nt0.88□□□□□ -2.27
YNL040WP53960 YAL063C-AYAL063C-A 291 nt0.88□□□□□ -2.27
YNL040WP53960 YPR016W-AYPR016W-A 261 nt0.88□□□□□ -2.27
YNL040WP53960 IFH1YLR223C 3258 nt0.88□□□□□ -2.27
YNL040WP53960 QCR9YGR183C 201 nt0.86□□□□□ -2.27
YNL040WP53960 CUL3YGR003W 2235 nt0.86□□□□□ -2.27
YNL040WP53960 tF(GAA)BtF(GAA)B 73 nt0.85□□□□□ -2.27
YNL040WP53960 tF(GAA)FtF(GAA)F 73 nt0.85□□□□□ -2.27
YNL040WP53960 tF(GAA)GtF(GAA)G 73 nt0.85□□□□□ -2.27
YNL040WP53960 tF(GAA)H1tF(GAA)H1 73 nt0.85□□□□□ -2.27
YNL040WP53960 tF(GAA)H2tF(GAA)H2 73 nt0.85□□□□□ -2.27
YNL040WP53960 tF(GAA)MtF(GAA)M 73 nt0.85□□□□□ -2.27
YNL040WP53960 tF(GAA)P1tF(GAA)P1 73 nt0.85□□□□□ -2.27
YNL040WP53960 tF(GAA)P2tF(GAA)P2 73 nt0.85□□□□□ -2.27
YNL040WP53960 YIL142C-AYIL142C-A 333 nt0.85□□□□□ -2.27
YNL040WP53960 YAR029WYAR029W 225 nt0.85□□□□□ -2.27
YNL040WP53960 HTB2YBL002W 396 nt0.85□□□□□ -2.27
YNL040WP53960 WAR1YML076C 2835 nt0.84□□□□□ -2.27
YNL040WP53960 GEA2YEL022W 4380 nt0.84□□□□□ -2.27
YNL040WP53960 YIR044CYIR044C 186 nt0.84□□□□□ -2.27
YNL040WP53960 YLL007CYLL007C 1998 nt0.84□□□□□ -2.28
YNL040WP53960 YHR007C-AYHR007C-A 216 nt0.83□□□□□ -2.28
YNL040WP53960 YCK3YER123W 1575 nt0.83□□□□□ -2.28
YNL040WP53960 KAP120YPL125W 3099 nt0.83□□□□□ -2.28
YNL040WP53960 NUP157YER105C 4176 nt0.82□□□□□ -2.28
YNL040WP53960 YBR206WYBR206W 324 nt0.82□□□□□ -2.28
YNL040WP53960 YDR048CYDR048C 315 nt0.81□□□□□ -2.28
YNL040WP53960 YDR521WYDR521W 336 nt0.81□□□□□ -2.28
YNL040WP53960 YPR197CYPR197C 564 nt0.81□□□□□ -2.28
YNL040WP53960 PAN2YGL094C 3348 nt0.81□□□□□ -2.28
YNL040WP53960 PTP2YOR208W 2253 nt0.8□□□□□ -2.28
YNL040WP53960 HMRA1YCR097W 381 nt0.8□□□□□ -2.28
YNL040WP53960 GIM4YEL003W 336 nt0.8□□□□□ -2.28
YNL040WP53960 UBP3YER151C 2739 nt0.79□□□□□ -2.28
YNL040WP53960 NHP2YDL208W 471 nt0.79□□□□□ -2.28
YNL040WP53960 YAF9YNL107W 681 nt0.79□□□□□ -2.28
YNL040WP53960 YBR064WYBR064W 429 nt0.79□□□□□ -2.28
YNL040WP53960 SEC1YDR164C 2175 nt0.77□□□□□ -2.29
YNL040WP53960 snR56snR56 88 nt0.77□□□□□ -2.29
YNL040WP53960 SSS1YDR086C 243 nt0.77□□□□□ -2.29
YNL040WP53960 YHL042WYHL042W 453 nt0.77□□□□□ -2.29
YNL040WP53960 HMRA2YCR096C 360 nt0.76□□□□□ -2.29
YNL040WP53960 YDR102CYDR102C 333 nt0.76□□□□□ -2.29
YNL040WP53960 ISD11YER048W-A 285 nt0.76□□□□□ -2.29
YNL040WP53960 ECM12YHR021W-A 456 nt0.76□□□□□ -2.29
YNL040WP53960 YHR175W-AYHR175W-A 150 nt0.76□□□□□ -2.29
YNL040WP53960 TAR1YLR154W-C 375 nt0.76□□□□□ -2.29
YNL040WP53960 IES4YOR189W 351 nt0.76□□□□□ -2.29
YNL040WP53960 YDL196WYDL196W 330 nt0.75□□□□□ -2.29
YNL040WP53960 YDR344CYDR344C 444 nt0.75□□□□□ -2.29
YNL040WP53960 ALG13YGL047W 609 nt0.75□□□□□ -2.29
YNL040WP53960 YHL046W-AYHL046W-A 327 nt0.75□□□□□ -2.29
YNL040WP53960 CMC4YMR194C-B 222 nt0.75□□□□□ -2.29
YNL040WP53960 YOR011W-AYOR011W-A 207 nt0.75□□□□□ -2.29
YNL040WP53960 DBP6YNR038W 1890 nt0.75□□□□□ -2.29
YNL040WP53960 OLI1Q0130 231 nt0.74□□□□□ -2.29
YNL040WP53960 YPL038W-AYPL038W-A 192 nt0.74□□□□□ -2.29
Retrieved 100 of 7,029 protein–RNA pairs in 64.7 ms