Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 YDR413CYDR413C 576 nt1.36□□□□□ -2.19
UPF3P48412 YAR029WYAR029W 225 nt1.36□□□□□ -2.19
UPF3P48412 YNL146WYNL146W 303 nt1.36□□□□□ -2.19
UPF3P48412 PDE2YOR360C 1581 nt1.36□□□□□ -2.19
UPF3P48412 snR36snR36 182 nt1.36□□□□□ -2.19
UPF3P48412 CDC25YLR310C 4770 nt1.36□□□□□ -2.19
UPF3P48412 YDL206WYDL206W 2289 nt1.35□□□□□ -2.19
UPF3P48412 YBR200W-AYBR200W-A 165 nt1.35□□□□□ -2.19
UPF3P48412 YLL007CYLL007C 1998 nt1.35□□□□□ -2.19
UPF3P48412 IFH1YLR223C 3258 nt1.35□□□□□ -2.19
UPF3P48412 STO1YMR125W 2586 nt1.34□□□□□ -2.19
UPF3P48412 RAD9YDR217C 3930 nt1.34□□□□□ -2.19
UPF3P48412 YDR169C-AYDR169C-A 150 nt1.34□□□□□ -2.19
UPF3P48412 YDR183C-AYDR183C-A 258 nt1.34□□□□□ -2.19
UPF3P48412 YFL032WYFL032W 321 nt1.34□□□□□ -2.19
UPF3P48412 TAR1YLR154W-C 375 nt1.34□□□□□ -2.19
UPF3P48412 YBR221W-AYBR221W-A 105 nt1.34□□□□□ -2.19
UPF3P48412 NIP100YPL174C 2607 nt1.34□□□□□ -2.2
UPF3P48412 YER097WYER097W 330 nt1.33□□□□□ -2.2
UPF3P48412 ANS1YHR126C 480 nt1.33□□□□□ -2.2
UPF3P48412 RPL34BYIL052C 366 nt1.33□□□□□ -2.2
UPF3P48412 SET3YKR029C 2256 nt1.33□□□□□ -2.2
UPF3P48412 OST1YJL002C 1431 nt1.32□□□□□ -2.2
UPF3P48412 HMRA2YCR096C 360 nt1.32□□□□□ -2.2
UPF3P48412 SPC98YNL126W 2541 nt1.31□□□□□ -2.2
UPF3P48412 YDR048CYDR048C 315 nt1.31□□□□□ -2.2
UPF3P48412 YMR031W-AYMR031W-A 327 nt1.31□□□□□ -2.2
UPF3P48412 PAN2YGL094C 3348 nt1.31□□□□□ -2.2
UPF3P48412 YNL284C-BYNL284C-B 5268 nt1.3□□□□□ -2.2
UPF3P48412 TRM732YMR259C 4263 nt1.3□□□□□ -2.2
UPF3P48412 NUP192YJL039C 5052 nt1.3□□□□□ -2.2
UPF3P48412 ROM2YLR371W 4071 nt1.29□□□□□ -2.2
UPF3P48412 WAR1YML076C 2835 nt1.29□□□□□ -2.2
UPF3P48412 YIL020C-AYIL020C-A 339 nt1.29□□□□□ -2.2
UPF3P48412 RPL39YJL189W 156 nt1.29□□□□□ -2.2
UPF3P48412 STE5YDR103W 2754 nt1.28□□□□□ -2.2
UPF3P48412 CDC36YDL165W 576 nt1.28□□□□□ -2.2
UPF3P48412 YFL063WYFL063W 456 nt1.28□□□□□ -2.2
UPF3P48412 YBL008W-AYBL008W-A 240 nt1.28□□□□□ -2.2
UPF3P48412 YCK3YER123W 1575 nt1.28□□□□□ -2.2
UPF3P48412 YAR009CYAR009C 3591 nt1.28□□□□□ -2.21
UPF3P48412 SLD3YGL113W 2007 nt1.27□□□□□ -2.21
UPF3P48412 YGL149WYGL149W 306 nt1.27□□□□□ -2.21
UPF3P48412 tH(GUG)E1tH(GUG)E1 72 nt1.26□□□□□ -2.21
UPF3P48412 tH(GUG)E2tH(GUG)E2 72 nt1.26□□□□□ -2.21
UPF3P48412 tH(GUG)G1tH(GUG)G1 72 nt1.26□□□□□ -2.21
UPF3P48412 tH(GUG)G2tH(GUG)G2 72 nt1.26□□□□□ -2.21
UPF3P48412 tH(GUG)HtH(GUG)H 72 nt1.26□□□□□ -2.21
UPF3P48412 tH(GUG)KtH(GUG)K 72 nt1.26□□□□□ -2.21
UPF3P48412 tH(GUG)MtH(GUG)M 72 nt1.26□□□□□ -2.21
UPF3P48412 EAF1YDR359C 2949 nt1.26□□□□□ -2.21
UPF3P48412 HTL1YCR020W-B 237 nt1.25□□□□□ -2.21
UPF3P48412 YNL277W-AYNL277W-A 189 nt1.25□□□□□ -2.21
UPF3P48412 AHC1YOR023C 1701 nt1.25□□□□□ -2.21
UPF3P48412 DBP6YNR038W 1890 nt1.24□□□□□ -2.21
UPF3P48412 YDR521WYDR521W 336 nt1.23□□□□□ -2.21
UPF3P48412 STB6YKL072W 2301 nt1.23□□□□□ -2.21
UPF3P48412 YMR193C-AYMR193C-A 387 nt1.22□□□□□ -2.21
UPF3P48412 RPL33BYOR234C 324 nt1.22□□□□□ -2.21
UPF3P48412 snR65snR65 100 nt1.21□□□□□ -2.22
UPF3P48412 BUD3YCL014W 4911 nt1.21□□□□□ -2.22
UPF3P48412 NUP157YER105C 4176 nt1.2□□□□□ -2.22
UPF3P48412 YER181CYER181C 324 nt1.19□□□□□ -2.22
UPF3P48412 YIL032CYIL032C 357 nt1.19□□□□□ -2.22
UPF3P48412 YML099W-AYML099W-A 330 nt1.19□□□□□ -2.22
UPF3P48412 TTI1YKL033W 3117 nt1.18□□□□□ -2.22
UPF3P48412 YHL042WYHL042W 453 nt1.18□□□□□ -2.22
UPF3P48412 RPS25BYLR333C 327 nt1.18□□□□□ -2.22
UPF3P48412 YMR321CYMR321C 318 nt1.18□□□□□ -2.22
UPF3P48412 YOR231C-AYOR231C-A 201 nt1.18□□□□□ -2.22
UPF3P48412 SSS1YDR086C 243 nt1.17□□□□□ -2.22
UPF3P48412 LAA1YJL207C 6045 nt1.16□□□□□ -2.22
UPF3P48412 snR60snR60 104 nt1.16□□□□□ -2.22
UPF3P48412 YDR344CYDR344C 444 nt1.16□□□□□ -2.22
UPF3P48412 YIL115W-AYIL115W-A 372 nt1.16□□□□□ -2.22
UPF3P48412 YOR011W-AYOR011W-A 207 nt1.16□□□□□ -2.22
UPF3P48412 YPR010C-AYPR010C-A 219 nt1.16□□□□□ -2.22
UPF3P48412 YBR206WYBR206W 324 nt1.16□□□□□ -2.22
UPF3P48412 GEA2YEL022W 4380 nt1.16□□□□□ -2.22
UPF3P48412 ALG13YGL047W 609 nt1.15□□□□□ -2.23
UPF3P48412 MSH3YCR092C 3057 nt1.15□□□□□ -2.23
UPF3P48412 SPO21YOL091W 1830 nt1.15□□□□□ -2.23
UPF3P48412 YJR029WYJR029W 5268 nt1.14□□□□□ -2.23
UPF3P48412 YPR137C-BYPR137C-B 5268 nt1.14□□□□□ -2.23
UPF3P48412 MDS3YGL197W 4464 nt1.14□□□□□ -2.23
UPF3P48412 CSE2YNR010W 450 nt1.14□□□□□ -2.23
UPF3P48412 COG8YML071C 1824 nt1.14□□□□□ -2.23
UPF3P48412 CDC39YCR093W 6327 nt1.13□□□□□ -2.23
UPF3P48412 ISD11YER048W-A 285 nt1.13□□□□□ -2.23
UPF3P48412 YOR218CYOR218C 420 nt1.13□□□□□ -2.23
UPF3P48412 APL1YJR005W 2103 nt1.13□□□□□ -2.23
UPF3P48412 OLI1Q0130 231 nt1.12□□□□□ -2.23
UPF3P48412 INA22YIR024C 651 nt1.12□□□□□ -2.23
UPF3P48412 YJL120WYJL120W 324 nt1.12□□□□□ -2.23
UPF3P48412 VIK1YPL253C 1944 nt1.12□□□□□ -2.23
UPF3P48412 SPO75YLL005C 2607 nt1.11□□□□□ -2.23
UPF3P48412 YGR069WYGR069W 336 nt1.11□□□□□ -2.23
UPF3P48412 YOR282WYOR282W 321 nt1.11□□□□□ -2.23
UPF3P48412 YBR064WYBR064W 429 nt1.11□□□□□ -2.23
UPF3P48412 RAD61YDR014W 1944 nt1.11□□□□□ -2.23
Retrieved 100 of 7,029 protein–RNA pairs in 41.3 ms