Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
PTPN9P43378 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.91■□□□□ 0.94
PTPN9P43378 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PTPN9P43378 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.91■□□□□ 0.94
PTPN9P43378 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC20.91■□□□□ 0.94
PTPN9P43378 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC20.91■□□□□ 0.94
PTPN9P43378 SLC25A24-204ENST00000569674 2357 ntBASIC20.91■□□□□ 0.94
PTPN9P43378 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.91■□□□□ 0.94
PTPN9P43378 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
PTPN9P43378 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PTPN9P43378 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PTPN9P43378 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PTPN9P43378 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
PTPN9P43378 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
PTPN9P43378 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
PTPN9P43378 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
PTPN9P43378 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PTPN9P43378 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PTPN9P43378 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PTPN9P43378 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.9■□□□□ 0.94
PTPN9P43378 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PTPN9P43378 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.9■□□□□ 0.94
PTPN9P43378 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
PTPN9P43378 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.9■□□□□ 0.94
PTPN9P43378 AC133041.1-202ENST00000642053 222 ntBASIC20.9■□□□□ 0.94
PTPN9P43378 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.9■□□□□ 0.94
PTPN9P43378 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.9■□□□□ 0.94
PTPN9P43378 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.9■□□□□ 0.94
PTPN9P43378 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
PTPN9P43378 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.9■□□□□ 0.94
PTPN9P43378 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
PTPN9P43378 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PTPN9P43378 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
PTPN9P43378 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
PTPN9P43378 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
PTPN9P43378 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
PTPN9P43378 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PTPN9P43378 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
PTPN9P43378 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
PTPN9P43378 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PTPN9P43378 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PTPN9P43378 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PTPN9P43378 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PTPN9P43378 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PTPN9P43378 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.89■□□□□ 0.93
PTPN9P43378 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PTPN9P43378 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
PTPN9P43378 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.88■□□□□ 0.93
PTPN9P43378 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.88■□□□□ 0.93
PTPN9P43378 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.88■□□□□ 0.93
PTPN9P43378 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.88■□□□□ 0.93
PTPN9P43378 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PTPN9P43378 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PTPN9P43378 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTPN9P43378 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
PTPN9P43378 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.88■□□□□ 0.93
PTPN9P43378 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.88■□□□□ 0.93
PTPN9P43378 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.88■□□□□ 0.93
PTPN9P43378 AC083880.1-201ENST00000608266 535 ntBASIC20.88■□□□□ 0.93
PTPN9P43378 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.88■□□□□ 0.93
PTPN9P43378 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.88■□□□□ 0.93
PTPN9P43378 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.88■□□□□ 0.93
PTPN9P43378 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PTPN9P43378 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
PTPN9P43378 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.88■□□□□ 0.93
PTPN9P43378 KRT16P6-202ENST00000425692 1426 ntBASIC20.87■□□□□ 0.93
PTPN9P43378 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.87■□□□□ 0.93
PTPN9P43378 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.87■□□□□ 0.93
PTPN9P43378 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
PTPN9P43378 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PTPN9P43378 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PTPN9P43378 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.87■□□□□ 0.93
PTPN9P43378 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PTPN9P43378 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.87■□□□□ 0.93
PTPN9P43378 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
PTPN9P43378 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PTPN9P43378 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.87■□□□□ 0.93
PTPN9P43378 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.87■□□□□ 0.93
PTPN9P43378 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.87■□□□□ 0.93
PTPN9P43378 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.87■□□□□ 0.93
PTPN9P43378 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PTPN9P43378 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PTPN9P43378 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.87■□□□□ 0.93
PTPN9P43378 AC112907.3-201ENST00000577781 2400 ntBASIC20.87■□□□□ 0.93
PTPN9P43378 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.87■□□□□ 0.93
PTPN9P43378 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PTPN9P43378 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PTPN9P43378 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTPN9P43378 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.86■□□□□ 0.93
PTPN9P43378 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTPN9P43378 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTPN9P43378 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTPN9P43378 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTPN9P43378 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.86■□□□□ 0.93
PTPN9P43378 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTPN9P43378 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTPN9P43378 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTPN9P43378 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.86■□□□□ 0.93
PTPN9P43378 HLA-B-256ENST00000639848 1089 ntBASIC20.86■□□□□ 0.93
PTPN9P43378 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms