Protein–RNA interactions for Protein: P40965

MSH4, MutS protein homolog 4, yeastyeast

Predicted RBP Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH4P40965 YCL046WYCL046W 324 nt2.58□□□□□ -2
MSH4P40965 RAD34YDR314C 2079 nt2.57□□□□□ -2
MSH4P40965 IST2YBR086C 2841 nt2.57□□□□□ -2
MSH4P40965 ZRG17YNR039C 1818 nt2.57□□□□□ -2
MSH4P40965 YMR242W-AYMR242W-A 90 nt2.57□□□□□ -2
MSH4P40965 GIP3YPL137C 3831 nt2.56□□□□□ -2
MSH4P40965 PIP2YOR363C 2991 nt2.56□□□□□ -2
MSH4P40965 ZIP2YGL249W 2115 nt2.56□□□□□ -2
MSH4P40965 UTP22YGR090W 3714 nt2.56□□□□□ -2
MSH4P40965 NOC3YLR002C 1992 nt2.56□□□□□ -2
MSH4P40965 RTT101YJL047C 2529 nt2.56□□□□□ -2
MSH4P40965 IRC8YJL051W 2469 nt2.55□□□□□ -2
MSH4P40965 NAM7YMR080C 2916 nt2.55□□□□□ -2
MSH4P40965 AHC1YOR023C 1701 nt2.55□□□□□ -2
MSH4P40965 YOR108C-AYOR108C-A 210 nt2.55□□□□□ -2
MSH4P40965 YPL044CYPL044C 549 nt2.55□□□□□ -2
MSH4P40965 SSD1YDR293C 3753 nt2.55□□□□□ -2
MSH4P40965 RPL31AYDL075W 342 nt2.54□□□□□ -2
MSH4P40965 YBR099CYBR099C 384 nt2.54□□□□□ -2
MSH4P40965 CAT2YML042W 2013 nt2.53□□□□□ -2
MSH4P40965 CDC60YPL160W 3273 nt2.53□□□□□ -2
MSH4P40965 YKR075W-AYKR075W-A 270 nt2.53□□□□□ -2
MSH4P40965 SAS3YBL052C 2496 nt2.53□□□□□ -2
MSH4P40965 PBY1YBR094W 2262 nt2.53□□□□□ -2
MSH4P40965 TFC3YAL001C 3483 nt2.52□□□□□ -2.01
MSH4P40965 YCR102W-AYCR102W-A 198 nt2.52□□□□□ -2.01
MSH4P40965 MAD1YGL086W 2250 nt2.52□□□□□ -2.01
MSH4P40965 ZIP1YDR285W 2628 nt2.52□□□□□ -2.01
MSH4P40965 SYH1YPL105C 2550 nt2.51□□□□□ -2.01
MSH4P40965 TDA9YML081W 3756 nt2.5□□□□□ -2.01
MSH4P40965 NOP14YDL148C 2433 nt2.5□□□□□ -2.01
MSH4P40965 snR61snR61 90 nt2.5□□□□□ -2.01
MSH4P40965 SLD3YGL113W 2007 nt2.5□□□□□ -2.01
MSH4P40965 CTF4YPR135W 2784 nt2.49□□□□□ -2.01
MSH4P40965 HSH155YMR288W 2916 nt2.49□□□□□ -2.01
MSH4P40965 GYP5YPL249C 2685 nt2.49□□□□□ -2.01
MSH4P40965 YCR095W-AYCR095W-A 159 nt2.49□□□□□ -2.01
MSH4P40965 PAA1YDR071C 576 nt2.49□□□□□ -2.01
MSH4P40965 RPL37BYDR500C 267 nt2.49□□□□□ -2.01
MSH4P40965 YIL134C-AYIL134C-A 204 nt2.49□□□□□ -2.01
MSH4P40965 DCP2YNL118C 2913 nt2.49□□□□□ -2.01
MSH4P40965 SBE22YHR103W 2559 nt2.49□□□□□ -2.01
MSH4P40965 BUD2YKL092C 3315 nt2.48□□□□□ -2.01
MSH4P40965 YFR012W-AYFR012W-A 87 nt2.48□□□□□ -2.01
MSH4P40965 KIP1YBL063W 3336 nt2.48□□□□□ -2.01
MSH4P40965 ENV11YGR071C 2583 nt2.48□□□□□ -2.01
MSH4P40965 PTP2YOR208W 2253 nt2.47□□□□□ -2.01
MSH4P40965 SBH1YER087C-B 249 nt2.47□□□□□ -2.01
MSH4P40965 SAP185YJL098W 3177 nt2.47□□□□□ -2.01
MSH4P40965 DGR2YKL121W 2559 nt2.46□□□□□ -2.02
MSH4P40965 APL2YKL135C 2181 nt2.45□□□□□ -2.02
MSH4P40965 YCR087C-AYCR087C-A 462 nt2.45□□□□□ -2.02
MSH4P40965 tL(UAA)QtL(UAA)Q 85 nt2.45□□□□□ -2.02
MSH4P40965 YJL052C-AYJL052C-A 120 nt2.45□□□□□ -2.02
MSH4P40965 CDC31YOR257W 486 nt2.45□□□□□ -2.02
MSH4P40965 IRA2YOL081W 9240 nt2.45□□□□□ -2.02
MSH4P40965 RGA1YOR127W 3024 nt2.45□□□□□ -2.02
MSH4P40965 SPP41YDR464W 4308 nt2.44□□□□□ -2.02
MSH4P40965 FAB1YFR019W 6837 nt2.44□□□□□ -2.02
MSH4P40965 YNL067W-BYNL067W-B 141 nt2.44□□□□□ -2.02
MSH4P40965 RPS30BYOR182C 192 nt2.44□□□□□ -2.02
MSH4P40965 UFD4YKL010C 4452 nt2.44□□□□□ -2.02
MSH4P40965 YLR282CYLR282C 342 nt2.43□□□□□ -2.02
MSH4P40965 PET309YLR067C 2898 nt2.42□□□□□ -2.02
MSH4P40965 OST4YDL232W 111 nt2.42□□□□□ -2.02
MSH4P40965 CMC4YMR194C-B 222 nt2.42□□□□□ -2.02
MSH4P40965 YNL211CYNL211C 261 nt2.42□□□□□ -2.02
MSH4P40965 MAK10YEL053C 2202 nt2.41□□□□□ -2.02
MSH4P40965 YCR038W-AYCR038W-A 126 nt2.41□□□□□ -2.02
MSH4P40965 YBR206WYBR206W 324 nt2.41□□□□□ -2.02
MSH4P40965 YLR035C-AYLR035C-A 3468 nt2.41□□□□□ -2.02
MSH4P40965 UBP2YOR124C 3819 nt2.4□□□□□ -2.02
MSH4P40965 IFH1YLR223C 3258 nt2.4□□□□□ -2.02
MSH4P40965 YDR354C-AYDR354C-A 144 nt2.4□□□□□ -2.03
MSH4P40965 COX12YLR038C 252 nt2.4□□□□□ -2.03
MSH4P40965 DGR1YNL130C-A 147 nt2.4□□□□□ -2.03
MSH4P40965 PEP1YBL017C 4740 nt2.4□□□□□ -2.03
MSH4P40965 ATG9YDL149W 2994 nt2.4□□□□□ -2.03
MSH4P40965 YER172C-AYER172C-A 381 nt2.39□□□□□ -2.03
MSH4P40965 KOG1YHR186C 4674 nt2.39□□□□□ -2.03
MSH4P40965 MLH3YPL164C 2148 nt2.38□□□□□ -2.03
MSH4P40965 ALK1YGL021W 2283 nt2.37□□□□□ -2.03
MSH4P40965 BRE1YDL074C 2103 nt2.37□□□□□ -2.03
MSH4P40965 YDR521WYDR521W 336 nt2.37□□□□□ -2.03
MSH4P40965 YOR019WYOR019W 2193 nt2.37□□□□□ -2.03
MSH4P40965 PRP5YBR237W 2550 nt2.36□□□□□ -2.03
MSH4P40965 HER1YOR227W 3741 nt2.35□□□□□ -2.03
MSH4P40965 CHC1YGL206C 4962 nt2.35□□□□□ -2.03
MSH4P40965 YJL026C-AYJL026C-A 222 nt2.34□□□□□ -2.03
MSH4P40965 MSH5YDL154W 2706 nt2.34□□□□□ -2.03
MSH4P40965 PDR8YLR266C 2106 nt2.33□□□□□ -2.04
MSH4P40965 SOM1YEL059C-A 225 nt2.33□□□□□ -2.04
MSH4P40965 GCN2YDR283C 4980 nt2.32□□□□□ -2.04
MSH4P40965 HMI1YOL095C 2121 nt2.32□□□□□ -2.04
MSH4P40965 TTI1YKL033W 3117 nt2.32□□□□□ -2.04
MSH4P40965 CTR9YOL145C 3234 nt2.32□□□□□ -2.04
MSH4P40965 YDL118WYDL118W 381 nt2.32□□□□□ -2.04
MSH4P40965 YIL002W-AYIL002W-A 210 nt2.32□□□□□ -2.04
MSH4P40965 MGA2YIR033W 3342 nt2.32□□□□□ -2.04
MSH4P40965 USO1YDL058W 5373 nt2.32□□□□□ -2.04
Retrieved 100 of 7,029 protein–RNA pairs in 44.8 ms