Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.09■□□□□ 0.65
RORAP35398 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC19.09■□□□□ 0.65
RORAP35398 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.09■□□□□ 0.65
RORAP35398 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
RORAP35398 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC19.09■□□□□ 0.65
RORAP35398 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.09■□□□□ 0.65
RORAP35398 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
RORAP35398 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.09■□□□□ 0.65
RORAP35398 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.09■□□□□ 0.65
RORAP35398 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.09■□□□□ 0.65
RORAP35398 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
RORAP35398 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
RORAP35398 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RORAP35398 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.09■□□□□ 0.65
RORAP35398 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
RORAP35398 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC19.08■□□□□ 0.65
RORAP35398 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
RORAP35398 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
RORAP35398 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
RORAP35398 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.08■□□□□ 0.65
RORAP35398 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
RORAP35398 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
RORAP35398 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
RORAP35398 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
RORAP35398 AC023632.3-201ENST00000521633 145 ntBASIC19.08■□□□□ 0.64
RORAP35398 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
RORAP35398 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
RORAP35398 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
RORAP35398 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
RORAP35398 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.08■□□□□ 0.64
RORAP35398 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
RORAP35398 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
RORAP35398 AC006128.1-201ENST00000624704 1661 ntBASIC19.08■□□□□ 0.64
RORAP35398 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
RORAP35398 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
RORAP35398 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RORAP35398 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RORAP35398 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
RORAP35398 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
RORAP35398 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RORAP35398 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC19.07■□□□□ 0.64
RORAP35398 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.07■□□□□ 0.64
RORAP35398 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.07■□□□□ 0.64
RORAP35398 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
RORAP35398 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RORAP35398 SERF2-207ENST00000409614 582 ntTSL 2 BASIC19.07■□□□□ 0.64
RORAP35398 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.07■□□□□ 0.64
RORAP35398 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
RORAP35398 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.07■□□□□ 0.64
RORAP35398 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
RORAP35398 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.07■□□□□ 0.64
RORAP35398 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC19.07■□□□□ 0.64
RORAP35398 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
RORAP35398 SPIB-206ENST00000596074 847 ntTSL 2 BASIC19.07■□□□□ 0.64
RORAP35398 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.07■□□□□ 0.64
RORAP35398 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.07■□□□□ 0.64
RORAP35398 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RORAP35398 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
RORAP35398 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.07■□□□□ 0.64
RORAP35398 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
RORAP35398 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.07■□□□□ 0.64
RORAP35398 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
RORAP35398 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RORAP35398 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.06■□□□□ 0.64
RORAP35398 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
RORAP35398 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.06■□□□□ 0.64
RORAP35398 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RORAP35398 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
RORAP35398 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
RORAP35398 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
RORAP35398 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
RORAP35398 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
RORAP35398 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC19.06■□□□□ 0.64
RORAP35398 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
RORAP35398 AC133681.1-201ENST00000465482 601 ntBASIC19.06■□□□□ 0.64
RORAP35398 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.06■□□□□ 0.64
RORAP35398 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.06■□□□□ 0.64
RORAP35398 AC124016.1-201ENST00000609552 612 ntBASIC19.06■□□□□ 0.64
RORAP35398 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
RORAP35398 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.06■□□□□ 0.64
RORAP35398 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.06■□□□□ 0.64
RORAP35398 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
RORAP35398 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RORAP35398 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.05■□□□□ 0.64
RORAP35398 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
RORAP35398 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RORAP35398 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RORAP35398 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
RORAP35398 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.05■□□□□ 0.64
RORAP35398 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
RORAP35398 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RORAP35398 MIR718-201ENST00000390190 70 ntBASIC19.05■□□□□ 0.64
RORAP35398 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC19.05■□□□□ 0.64
RORAP35398 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.05■□□□□ 0.64
RORAP35398 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.05■□□□□ 0.64
RORAP35398 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.05■□□□□ 0.64
RORAP35398 AL023875.1-201ENST00000640777 796 ntBASIC19.05■□□□□ 0.64
RORAP35398 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.05■□□□□ 0.64
RORAP35398 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RORAP35398 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms