Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC22.66■■□□□ 1.22
CIITAP33076 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
CIITAP33076 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC22.66■■□□□ 1.22
CIITAP33076 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC22.66■■□□□ 1.22
CIITAP33076 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC22.66■■□□□ 1.22
CIITAP33076 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CIITAP33076 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CIITAP33076 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC22.65■■□□□ 1.22
CIITAP33076 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC22.65■■□□□ 1.22
CIITAP33076 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CIITAP33076 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CIITAP33076 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CIITAP33076 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CIITAP33076 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC22.65■■□□□ 1.22
CIITAP33076 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC22.65■■□□□ 1.22
CIITAP33076 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC22.65■■□□□ 1.22
CIITAP33076 AC233263.1-201ENST00000578059 224 ntBASIC22.65■■□□□ 1.22
CIITAP33076 AC069544.1-201ENST00000609399 999 ntBASIC22.65■■□□□ 1.22
CIITAP33076 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CIITAP33076 AL512408.1-201ENST00000569378 2000 ntBASIC22.65■■□□□ 1.22
CIITAP33076 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC22.65■■□□□ 1.22
CIITAP33076 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
CIITAP33076 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC22.64■■□□□ 1.22
CIITAP33076 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
CIITAP33076 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
CIITAP33076 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC22.64■■□□□ 1.22
CIITAP33076 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
CIITAP33076 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
CIITAP33076 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
CIITAP33076 KRT18P29-201ENST00000397031 1267 ntBASIC22.64■■□□□ 1.21
CIITAP33076 RPS2P52-201ENST00000469610 820 ntBASIC22.64■■□□□ 1.21
CIITAP33076 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC22.64■■□□□ 1.21
CIITAP33076 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
CIITAP33076 MMD2-204ENST00000612910 778 ntTSL 5 BASIC22.64■■□□□ 1.21
CIITAP33076 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CIITAP33076 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC22.64■■□□□ 1.21
CIITAP33076 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC22.64■■□□□ 1.21
CIITAP33076 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CIITAP33076 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC22.64■■□□□ 1.21
CIITAP33076 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CIITAP33076 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
CIITAP33076 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CIITAP33076 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CIITAP33076 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
CIITAP33076 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CIITAP33076 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CIITAP33076 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CIITAP33076 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CIITAP33076 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CIITAP33076 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CIITAP33076 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC22.63■■□□□ 1.21
CIITAP33076 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CIITAP33076 MAX-217ENST00000557277 728 ntTSL 3 BASIC22.63■■□□□ 1.21
CIITAP33076 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
CIITAP33076 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CIITAP33076 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC22.63■■□□□ 1.21
CIITAP33076 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
CIITAP33076 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC22.62■■□□□ 1.21
CIITAP33076 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC22.62■■□□□ 1.21
CIITAP33076 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
CIITAP33076 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC22.62■■□□□ 1.21
CIITAP33076 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC22.62■■□□□ 1.21
CIITAP33076 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC22.62■■□□□ 1.21
CIITAP33076 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
CIITAP33076 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
CIITAP33076 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC22.62■■□□□ 1.21
CIITAP33076 BX119927.1-201ENST00000636596 1552 ntBASIC22.62■■□□□ 1.21
CIITAP33076 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CIITAP33076 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CIITAP33076 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CIITAP33076 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
CIITAP33076 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
CIITAP33076 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
CIITAP33076 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CIITAP33076 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC22.61■■□□□ 1.21
CIITAP33076 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC22.61■■□□□ 1.21
CIITAP33076 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CIITAP33076 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CIITAP33076 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC22.61■■□□□ 1.21
CIITAP33076 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC22.61■■□□□ 1.21
CIITAP33076 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
CIITAP33076 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC22.61■■□□□ 1.21
CIITAP33076 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CIITAP33076 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC22.61■■□□□ 1.21
CIITAP33076 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC22.61■■□□□ 1.21
CIITAP33076 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC22.61■■□□□ 1.21
CIITAP33076 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC22.61■■□□□ 1.21
CIITAP33076 RN7SL471P-201ENST00000580476 299 ntBASIC22.61■■□□□ 1.21
CIITAP33076 MTDHP1-201ENST00000605323 784 ntBASIC22.61■■□□□ 1.21
CIITAP33076 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC22.61■■□□□ 1.21
CIITAP33076 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC22.61■■□□□ 1.21
CIITAP33076 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CIITAP33076 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC22.61■■□□□ 1.21
CIITAP33076 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
CIITAP33076 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC22.61■■□□□ 1.21
CIITAP33076 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CIITAP33076 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CIITAP33076 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
CIITAP33076 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CIITAP33076 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC22.6■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms