Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
MSX1P28360 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.37■□□□□ 0.53
MSX1P28360 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
MSX1P28360 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
MSX1P28360 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
MSX1P28360 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSX1P28360 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
MSX1P28360 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSX1P28360 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSX1P28360 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSX1P28360 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSX1P28360 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSX1P28360 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSX1P28360 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSX1P28360 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
MSX1P28360 RPS2P4-201ENST00000476944 856 ntBASIC18.36■□□□□ 0.53
MSX1P28360 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
MSX1P28360 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.36■□□□□ 0.53
MSX1P28360 AC073314.1-201ENST00000568729 2216 ntBASIC18.36■□□□□ 0.53
MSX1P28360 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.36■□□□□ 0.53
MSX1P28360 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSX1P28360 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
MSX1P28360 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
MSX1P28360 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSX1P28360 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSX1P28360 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSX1P28360 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSX1P28360 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSX1P28360 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MSX1P28360 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
MSX1P28360 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
MSX1P28360 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSX1P28360 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MSX1P28360 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSX1P28360 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSX1P28360 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.35■□□□□ 0.53
MSX1P28360 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.35■□□□□ 0.53
MSX1P28360 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.35■□□□□ 0.53
MSX1P28360 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSX1P28360 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MSX1P28360 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MSX1P28360 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSX1P28360 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.35■□□□□ 0.53
MSX1P28360 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MSX1P28360 AC023632.3-201ENST00000521633 145 ntBASIC18.35■□□□□ 0.53
MSX1P28360 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
MSX1P28360 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.35■□□□□ 0.53
MSX1P28360 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
MSX1P28360 AC138932.1-201ENST00000534164 6830 ntBASIC18.35■□□□□ 0.53
MSX1P28360 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
MSX1P28360 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.35■□□□□ 0.53
MSX1P28360 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSX1P28360 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSX1P28360 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSX1P28360 DPP3P2-201ENST00000416030 1696 ntBASIC18.34■□□□□ 0.53
MSX1P28360 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18.34■□□□□ 0.53
MSX1P28360 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSX1P28360 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
MSX1P28360 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSX1P28360 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
MSX1P28360 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSX1P28360 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.34■□□□□ 0.53
MSX1P28360 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.34■□□□□ 0.53
MSX1P28360 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
MSX1P28360 AL596275.1-201ENST00000423464 877 ntBASIC18.34■□□□□ 0.53
MSX1P28360 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
MSX1P28360 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.34■□□□□ 0.53
MSX1P28360 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.34■□□□□ 0.53
MSX1P28360 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.34■□□□□ 0.53
MSX1P28360 UNC93B4-201ENST00000505679 747 ntBASIC18.34■□□□□ 0.53
MSX1P28360 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
MSX1P28360 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
MSX1P28360 AC073648.6-201ENST00000641589 218 ntBASIC18.34■□□□□ 0.53
MSX1P28360 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSX1P28360 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSX1P28360 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSX1P28360 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
MSX1P28360 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
MSX1P28360 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
MSX1P28360 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
MSX1P28360 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.33■□□□□ 0.53
MSX1P28360 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSX1P28360 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSX1P28360 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSX1P28360 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
MSX1P28360 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.33■□□□□ 0.52
MSX1P28360 HLA-G-202ENST00000376815 851 ntBASIC18.33■□□□□ 0.52
MSX1P28360 HLA-G-203ENST00000376818 1127 ntBASIC18.33■□□□□ 0.52
MSX1P28360 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.33■□□□□ 0.52
MSX1P28360 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.33■□□□□ 0.52
MSX1P28360 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSX1P28360 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
MSX1P28360 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSX1P28360 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC18.33■□□□□ 0.52
MSX1P28360 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSX1P28360 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSX1P28360 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
MSX1P28360 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSX1P28360 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSX1P28360 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms