Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC15.27■□□□□ 0.03
HLA-DMBP28068 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC15.27■□□□□ 0.03
HLA-DMBP28068 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HLA-DMBP28068 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HLA-DMBP28068 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HLA-DMBP28068 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC15.27■□□□□ 0.03
HLA-DMBP28068 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HLA-DMBP28068 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HLA-DMBP28068 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DMBP28068 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DMBP28068 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DMBP28068 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DMBP28068 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DMBP28068 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC15.26■□□□□ 0.03
HLA-DMBP28068 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DMBP28068 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DMBP28068 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC15.26■□□□□ 0.03
HLA-DMBP28068 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC15.26■□□□□ 0.03
HLA-DMBP28068 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DMBP28068 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DMBP28068 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DMBP28068 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DMBP28068 PARP1-202ENST00000366792 553 ntTSL 3 BASIC15.26■□□□□ 0.03
HLA-DMBP28068 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
HLA-DMBP28068 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC15.26■□□□□ 0.03
HLA-DMBP28068 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC15.26■□□□□ 0.03
HLA-DMBP28068 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC15.26■□□□□ 0.03
HLA-DMBP28068 VPS53-216ENST00000574029 585 ntTSL 4 BASIC15.26■□□□□ 0.03
HLA-DMBP28068 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC15.26■□□□□ 0.03
HLA-DMBP28068 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
HLA-DMBP28068 MYCNOS-205ENST00000641950 531 ntBASIC15.26■□□□□ 0.03
HLA-DMBP28068 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
HLA-DMBP28068 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DMBP28068 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DMBP28068 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DMBP28068 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DMBP28068 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC15.26■□□□□ 0.03
HLA-DMBP28068 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DMBP28068 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HLA-DMBP28068 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DMBP28068 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DMBP28068 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC15.25■□□□□ 0.03
HLA-DMBP28068 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC15.25■□□□□ 0.03
HLA-DMBP28068 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
HLA-DMBP28068 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC15.25■□□□□ 0.03
HLA-DMBP28068 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DMBP28068 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DMBP28068 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DMBP28068 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DMBP28068 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
HLA-DMBP28068 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
HLA-DMBP28068 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
HLA-DMBP28068 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC15.25■□□□□ 0.03
HLA-DMBP28068 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC15.25■□□□□ 0.03
HLA-DMBP28068 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DMBP28068 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DMBP28068 AC006015.1-201ENST00000429970 570 ntBASIC15.25■□□□□ 0.03
HLA-DMBP28068 VMO1-204ENST00000441199 741 ntTSL 2 BASIC15.25■□□□□ 0.03
HLA-DMBP28068 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DMBP28068 CDV3P1-201ENST00000471403 739 ntBASIC15.25■□□□□ 0.03
HLA-DMBP28068 CD44-222ENST00000526025 1052 ntTSL 2 BASIC15.25■□□□□ 0.03
HLA-DMBP28068 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC15.25■□□□□ 0.03
HLA-DMBP28068 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC15.25■□□□□ 0.03
HLA-DMBP28068 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC15.25■□□□□ 0.03
HLA-DMBP28068 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC15.25■□□□□ 0.03
HLA-DMBP28068 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC15.25■□□□□ 0.03
HLA-DMBP28068 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DMBP28068 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DMBP28068 AL691432.2-201ENST00000607222 2038 ntBASIC15.25■□□□□ 0.03
HLA-DMBP28068 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DMBP28068 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DMBP28068 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
HLA-DMBP28068 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
HLA-DMBP28068 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DMBP28068 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC15.25■□□□□ 0.03
HLA-DMBP28068 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DMBP28068 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DMBP28068 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC15.25■□□□□ 0.03
HLA-DMBP28068 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HLA-DMBP28068 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
HLA-DMBP28068 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DMBP28068 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DMBP28068 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DMBP28068 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
HLA-DMBP28068 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DMBP28068 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DMBP28068 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DMBP28068 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DMBP28068 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DMBP28068 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DMBP28068 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DMBP28068 HSCB-202ENST00000398941 955 ntTSL 2 BASIC15.24■□□□□ 0.03
HLA-DMBP28068 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC15.24■□□□□ 0.03
HLA-DMBP28068 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DMBP28068 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC15.24■□□□□ 0.03
HLA-DMBP28068 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DMBP28068 FAM21FP-204ENST00000608637 956 ntBASIC15.24■□□□□ 0.03
HLA-DMBP28068 AC080038.1-201ENST00000611274 1154 ntBASIC15.24■□□□□ 0.03
HLA-DMBP28068 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC15.24■□□□□ 0.03
HLA-DMBP28068 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms