Protein–RNA interactions for Protein: P25336

MSH3, DNA mismatch repair protein MSH3, yeastyeast

Predictions only

Length 1,018 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH3P25336 MSH5YDL154W 2706 nt2.45□□□□□ -2.02
MSH3P25336 SAP185YJL098W 3177 nt2.45□□□□□ -2.02
MSH3P25336 APL5YPL195W 2799 nt2.44□□□□□ -2.02
MSH3P25336 YPR097WYPR097W 3222 nt2.44□□□□□ -2.02
MSH3P25336 PIG1YLR273C 1947 nt2.44□□□□□ -2.02
MSH3P25336 SLD3YGL113W 2007 nt2.44□□□□□ -2.02
MSH3P25336 CDC60YPL160W 3273 nt2.43□□□□□ -2.02
MSH3P25336 SCP160YJL080C 3669 nt2.43□□□□□ -2.02
MSH3P25336 BUD2YKL092C 3315 nt2.43□□□□□ -2.02
MSH3P25336 SBE22YHR103W 2559 nt2.42□□□□□ -2.02
MSH3P25336 SPP41YDR464W 4308 nt2.41□□□□□ -2.02
MSH3P25336 HMI1YOL095C 2121 nt2.41□□□□□ -2.02
MSH3P25336 RTT107YHR154W 3213 nt2.41□□□□□ -2.02
MSH3P25336 SYH1YPL105C 2550 nt2.41□□□□□ -2.02
MSH3P25336 CTR9YOL145C 3234 nt2.4□□□□□ -2.02
MSH3P25336 YDR524C-AYDR524C-A 120 nt2.4□□□□□ -2.03
MSH3P25336 YJL052C-AYJL052C-A 120 nt2.4□□□□□ -2.03
MSH3P25336 PET309YLR067C 2898 nt2.4□□□□□ -2.03
MSH3P25336 SSD1YDR293C 3753 nt2.4□□□□□ -2.03
MSH3P25336 AGC1YPR021C 2709 nt2.4□□□□□ -2.03
MSH3P25336 SEC16YPL085W 6588 nt2.39□□□□□ -2.03
MSH3P25336 UBP2YOR124C 3819 nt2.39□□□□□ -2.03
MSH3P25336 YHL015W-AYHL015W-A 84 nt2.39□□□□□ -2.03
MSH3P25336 YOR102WYOR102W 351 nt2.39□□□□□ -2.03
MSH3P25336 IFH1YLR223C 3258 nt2.39□□□□□ -2.03
MSH3P25336 PBY1YBR094W 2262 nt2.38□□□□□ -2.03
MSH3P25336 YDR521WYDR521W 336 nt2.38□□□□□ -2.03
MSH3P25336 ALK1YGL021W 2283 nt2.38□□□□□ -2.03
MSH3P25336 SAP190YKR028W 3102 nt2.37□□□□□ -2.03
MSH3P25336 RPL37BYDR500C 267 nt2.37□□□□□ -2.03
MSH3P25336 YKR075W-AYKR075W-A 270 nt2.37□□□□□ -2.03
MSH3P25336 GIP3YPL137C 3831 nt2.37□□□□□ -2.03
MSH3P25336 RGA1YOR127W 3024 nt2.37□□□□□ -2.03
MSH3P25336 UBP1YDL122W 2430 nt2.37□□□□□ -2.03
MSH3P25336 YPL044CYPL044C 549 nt2.36□□□□□ -2.03
MSH3P25336 RAV1YJR033C 4074 nt2.35□□□□□ -2.03
MSH3P25336 IRE1YHR079C 3348 nt2.35□□□□□ -2.03
MSH3P25336 DGR1YNL130C-A 147 nt2.35□□□□□ -2.03
MSH3P25336 YOR314W-AYOR314W-A 111 nt2.35□□□□□ -2.03
MSH3P25336 YOR329W-AYOR329W-A 210 nt2.35□□□□□ -2.03
MSH3P25336 UTP22YGR090W 3714 nt2.34□□□□□ -2.03
MSH3P25336 YIL134C-AYIL134C-A 204 nt2.34□□□□□ -2.03
MSH3P25336 YJL022WYJL022W 309 nt2.34□□□□□ -2.03
MSH3P25336 BRE1YDL074C 2103 nt2.33□□□□□ -2.04
MSH3P25336 RTT101YJL047C 2529 nt2.33□□□□□ -2.04
MSH3P25336 PKH2YOL100W 3246 nt2.32□□□□□ -2.04
MSH3P25336 REV3YPL167C 4515 nt2.32□□□□□ -2.04
MSH3P25336 YCR087C-AYCR087C-A 462 nt2.32□□□□□ -2.04
MSH3P25336 YDR354C-AYDR354C-A 144 nt2.32□□□□□ -2.04
MSH3P25336 YBR206WYBR206W 324 nt2.32□□□□□ -2.04
MSH3P25336 YCL001W-BYCL001W-B 255 nt2.32□□□□□ -2.04
MSH3P25336 SLI15YBR156C 2097 nt2.31□□□□□ -2.04
MSH3P25336 TDA9YML081W 3756 nt2.31□□□□□ -2.04
MSH3P25336 YMR175W-AYMR175W-A 195 nt2.31□□□□□ -2.04
MSH3P25336 RPS30BYOR182C 192 nt2.31□□□□□ -2.04
MSH3P25336 SIR4YDR227W 4077 nt2.31□□□□□ -2.04
MSH3P25336 CTF4YPR135W 2784 nt2.31□□□□□ -2.04
MSH3P25336 CHC1YGL206C 4962 nt2.3□□□□□ -2.04
MSH3P25336 UFD4YKL010C 4452 nt2.3□□□□□ -2.04
MSH3P25336 FRK1YPL141C 2598 nt2.3□□□□□ -2.04
MSH3P25336 COG4YPR105C 2586 nt2.29□□□□□ -2.04
MSH3P25336 KOG1YHR186C 4674 nt2.29□□□□□ -2.04
MSH3P25336 TOR2YKL203C 7425 nt2.28□□□□□ -2.04
MSH3P25336 YNL144CYNL144C 2223 nt2.28□□□□□ -2.04
MSH3P25336 YJL026C-AYJL026C-A 222 nt2.28□□□□□ -2.04
MSH3P25336 COX12YLR038C 252 nt2.28□□□□□ -2.04
MSH3P25336 USO1YDL058W 5373 nt2.28□□□□□ -2.04
MSH3P25336 YBL109WYBL109W 336 nt2.27□□□□□ -2.05
MSH3P25336 YOR343W-BYOR343W-B 5313 nt2.27□□□□□ -2.05
MSH3P25336 IST2YBR086C 2841 nt2.26□□□□□ -2.05
MSH3P25336 YCR038W-AYCR038W-A 126 nt2.26□□□□□ -2.05
MSH3P25336 PAA1YDR071C 576 nt2.26□□□□□ -2.05
MSH3P25336 INO80YGL150C 4470 nt2.26□□□□□ -2.05
MSH3P25336 SEY1YOR165W 2331 nt2.25□□□□□ -2.05
MSH3P25336 APL1YJR005W 2103 nt2.24□□□□□ -2.05
MSH3P25336 TTI1YKL033W 3117 nt2.24□□□□□ -2.05
MSH3P25336 YER053C-AYER053C-A 114 nt2.24□□□□□ -2.05
MSH3P25336 ADR1YDR216W 3972 nt2.24□□□□□ -2.05
MSH3P25336 YDL118WYDL118W 381 nt2.23□□□□□ -2.05
MSH3P25336 YGR109W-BYGR109W-B 4644 nt2.22□□□□□ -2.05
MSH3P25336 YFR012W-AYFR012W-A 87 nt2.22□□□□□ -2.05
MSH3P25336 TRM3YDL112W 4311 nt2.22□□□□□ -2.05
MSH3P25336 HIR3YJR140C 4947 nt2.22□□□□□ -2.05
MSH3P25336 YIL002W-AYIL002W-A 210 nt2.21□□□□□ -2.06
MSH3P25336 SFB2YNL049C 2631 nt2.21□□□□□ -2.06
MSH3P25336 NEO1YIL048W 3456 nt2.21□□□□□ -2.06
MSH3P25336 GCN2YDR283C 4980 nt2.2□□□□□ -2.06
MSH3P25336 PRP5YBR237W 2550 nt2.2□□□□□ -2.06
MSH3P25336 SEC63YOR254C 1992 nt2.2□□□□□ -2.06
MSH3P25336 HER1YOR227W 3741 nt2.2□□□□□ -2.06
MSH3P25336 YDR544CYDR544C 429 nt2.19□□□□□ -2.06
MSH3P25336 YIL071W-AYIL071W-A 477 nt2.19□□□□□ -2.06
MSH3P25336 YDL206WYDL206W 2289 nt2.18□□□□□ -2.06
MSH3P25336 CDC31YOR257W 486 nt2.18□□□□□ -2.06
MSH3P25336 MSH6YDR097C 3729 nt2.18□□□□□ -2.06
MSH3P25336 UTP21YLR409C 2820 nt2.17□□□□□ -2.06
MSH3P25336 tL(UAA)QtL(UAA)Q 85 nt2.17□□□□□ -2.06
MSH3P25336 SPO24YPR036W-A 204 nt2.17□□□□□ -2.06
MSH3P25336 YOR019WYOR019W 2193 nt2.17□□□□□ -2.06
MSH3P25336 YNL211CYNL211C 261 nt2.16□□□□□ -2.06
Retrieved 100 of 7,029 protein–RNA pairs in 31.9 ms