Protein–RNA interactions for Protein: P22090

RPS4Y1, 40S ribosomal protein S4, Y isoform 1, humanhuman

Known RBP Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS4Y1P22090 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RPS4Y1P22090 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.42■□□□□ 0.54
RPS4Y1P22090 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
RPS4Y1P22090 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
RPS4Y1P22090 KRT8P20-201ENST00000423953 1409 ntBASIC18.42■□□□□ 0.54
RPS4Y1P22090 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RPS4Y1P22090 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.42■□□□□ 0.54
RPS4Y1P22090 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RPS4Y1P22090 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.42■□□□□ 0.54
RPS4Y1P22090 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
RPS4Y1P22090 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.42■□□□□ 0.54
RPS4Y1P22090 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.42■□□□□ 0.54
RPS4Y1P22090 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.42■□□□□ 0.54
RPS4Y1P22090 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RPS4Y1P22090 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
RPS4Y1P22090 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.42■□□□□ 0.54
RPS4Y1P22090 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
RPS4Y1P22090 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RPS4Y1P22090 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
RPS4Y1P22090 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RPS4Y1P22090 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
RPS4Y1P22090 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
RPS4Y1P22090 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC18.41■□□□□ 0.54
RPS4Y1P22090 AC026185.1-201ENST00000445748 174 ntBASIC18.41■□□□□ 0.54
RPS4Y1P22090 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
RPS4Y1P22090 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RPS4Y1P22090 MARS-234ENST00000630571 216 ntTSL 5 BASIC18.41■□□□□ 0.54
RPS4Y1P22090 MARS-235ENST00000630803 183 ntTSL 3 BASIC18.41■□□□□ 0.54
RPS4Y1P22090 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RPS4Y1P22090 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RPS4Y1P22090 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RPS4Y1P22090 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
RPS4Y1P22090 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
RPS4Y1P22090 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RPS4Y1P22090 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RPS4Y1P22090 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RPS4Y1P22090 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RPS4Y1P22090 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.4■□□□□ 0.54
RPS4Y1P22090 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.4■□□□□ 0.54
RPS4Y1P22090 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RPS4Y1P22090 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RPS4Y1P22090 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.4■□□□□ 0.54
RPS4Y1P22090 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RPS4Y1P22090 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RPS4Y1P22090 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RPS4Y1P22090 MIR663A-201ENST00000385250 93 ntBASIC18.4■□□□□ 0.54
RPS4Y1P22090 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RPS4Y1P22090 DLX3-202ENST00000512495 834 ntTSL 2 BASIC18.4■□□□□ 0.54
RPS4Y1P22090 AC023632.3-201ENST00000521633 145 ntBASIC18.4■□□□□ 0.54
RPS4Y1P22090 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RPS4Y1P22090 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.4■□□□□ 0.54
RPS4Y1P22090 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RPS4Y1P22090 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RPS4Y1P22090 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RPS4Y1P22090 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.4■□□□□ 0.54
RPS4Y1P22090 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
RPS4Y1P22090 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RPS4Y1P22090 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
RPS4Y1P22090 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC18.39■□□□□ 0.54
RPS4Y1P22090 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RPS4Y1P22090 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.39■□□□□ 0.53
RPS4Y1P22090 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
RPS4Y1P22090 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
RPS4Y1P22090 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
RPS4Y1P22090 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.39■□□□□ 0.53
RPS4Y1P22090 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
RPS4Y1P22090 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RPS4Y1P22090 CROCCP5-201ENST00000436658 830 ntBASIC18.39■□□□□ 0.53
RPS4Y1P22090 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC18.39■□□□□ 0.53
RPS4Y1P22090 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.39■□□□□ 0.53
RPS4Y1P22090 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RPS4Y1P22090 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
RPS4Y1P22090 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.39■□□□□ 0.53
RPS4Y1P22090 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RPS4Y1P22090 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.39■□□□□ 0.53
RPS4Y1P22090 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RPS4Y1P22090 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
RPS4Y1P22090 KRT16P6-202ENST00000425692 1426 ntBASIC18.39■□□□□ 0.53
RPS4Y1P22090 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RPS4Y1P22090 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RPS4Y1P22090 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.39■□□□□ 0.53
RPS4Y1P22090 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
RPS4Y1P22090 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RPS4Y1P22090 AC009237.14-201ENST00000609975 1594 ntBASIC18.38■□□□□ 0.53
RPS4Y1P22090 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RPS4Y1P22090 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.38■□□□□ 0.53
RPS4Y1P22090 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RPS4Y1P22090 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RPS4Y1P22090 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.38■□□□□ 0.53
RPS4Y1P22090 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.38■□□□□ 0.53
RPS4Y1P22090 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.38■□□□□ 0.53
RPS4Y1P22090 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RPS4Y1P22090 AF201337.1-201ENST00000520239 748 ntBASIC18.38■□□□□ 0.53
RPS4Y1P22090 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.38■□□□□ 0.53
RPS4Y1P22090 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RPS4Y1P22090 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RPS4Y1P22090 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.38■□□□□ 0.53
RPS4Y1P22090 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
RPS4Y1P22090 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RPS4Y1P22090 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms