Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PDGFRAP16234 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PDGFRAP16234 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
PDGFRAP16234 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDGFRAP16234 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC21.07■□□□□ 0.96
PDGFRAP16234 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDGFRAP16234 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDGFRAP16234 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PDGFRAP16234 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC21.07■□□□□ 0.96
PDGFRAP16234 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDGFRAP16234 PCDHAC2-203ENST00000615316 3011 ntBASIC21.07■□□□□ 0.96
PDGFRAP16234 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDGFRAP16234 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.07■□□□□ 0.96
PDGFRAP16234 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC21.07■□□□□ 0.96
PDGFRAP16234 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
PDGFRAP16234 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDGFRAP16234 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC21.07■□□□□ 0.96
PDGFRAP16234 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PDGFRAP16234 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDGFRAP16234 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDGFRAP16234 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDGFRAP16234 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDGFRAP16234 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC21.07■□□□□ 0.96
PDGFRAP16234 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PDGFRAP16234 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PDGFRAP16234 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.06■□□□□ 0.96
PDGFRAP16234 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
PDGFRAP16234 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PDGFRAP16234 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PDGFRAP16234 AC073210.2-201ENST00000430369 194 ntBASIC21.06■□□□□ 0.96
PDGFRAP16234 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PDGFRAP16234 PTBP1P-201ENST00000554374 1601 ntBASIC21.06■□□□□ 0.96
PDGFRAP16234 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
PDGFRAP16234 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC21.06■□□□□ 0.96
PDGFRAP16234 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
PDGFRAP16234 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PDGFRAP16234 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PDGFRAP16234 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
PDGFRAP16234 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
PDGFRAP16234 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDGFRAP16234 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.05■□□□□ 0.96
PDGFRAP16234 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDGFRAP16234 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PDGFRAP16234 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.05■□□□□ 0.96
PDGFRAP16234 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDGFRAP16234 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDGFRAP16234 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDGFRAP16234 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
PDGFRAP16234 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC21.05■□□□□ 0.96
PDGFRAP16234 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDGFRAP16234 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC21.05■□□□□ 0.96
PDGFRAP16234 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC21.05■□□□□ 0.96
PDGFRAP16234 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PDGFRAP16234 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDGFRAP16234 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDGFRAP16234 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDGFRAP16234 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC21.05■□□□□ 0.96
PDGFRAP16234 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC21.05■□□□□ 0.96
PDGFRAP16234 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDGFRAP16234 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PDGFRAP16234 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDGFRAP16234 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PDGFRAP16234 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PDGFRAP16234 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
PDGFRAP16234 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PDGFRAP16234 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
PDGFRAP16234 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PDGFRAP16234 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
PDGFRAP16234 SERPINH1P1-201ENST00000419794 1249 ntBASIC21.04■□□□□ 0.96
PDGFRAP16234 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC21.04■□□□□ 0.96
PDGFRAP16234 OR2A1-AS1-201ENST00000462305 773 ntBASIC21.04■□□□□ 0.96
PDGFRAP16234 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC21.04■□□□□ 0.96
PDGFRAP16234 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC21.04■□□□□ 0.96
PDGFRAP16234 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC21.04■□□□□ 0.96
PDGFRAP16234 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC21.04■□□□□ 0.96
PDGFRAP16234 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC21.04■□□□□ 0.96
PDGFRAP16234 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
PDGFRAP16234 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PDGFRAP16234 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PDGFRAP16234 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
PDGFRAP16234 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC21.03■□□□□ 0.96
PDGFRAP16234 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
PDGFRAP16234 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PDGFRAP16234 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
PDGFRAP16234 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PDGFRAP16234 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.03■□□□□ 0.96
PDGFRAP16234 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC21.03■□□□□ 0.96
PDGFRAP16234 DUSP5P2-201ENST00000426873 1033 ntBASIC21.03■□□□□ 0.96
PDGFRAP16234 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PDGFRAP16234 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC21.03■□□□□ 0.96
PDGFRAP16234 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC21.03■□□□□ 0.96
PDGFRAP16234 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PDGFRAP16234 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PDGFRAP16234 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PDGFRAP16234 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC21.03■□□□□ 0.96
PDGFRAP16234 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PDGFRAP16234 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC21.03■□□□□ 0.96
PDGFRAP16234 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.03■□□□□ 0.96
PDGFRAP16234 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
PDGFRAP16234 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms