Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC26.68■■□□□ 1.86
COL3A1P02461 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC26.68■■□□□ 1.86
COL3A1P02461 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC26.68■■□□□ 1.86
COL3A1P02461 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC26.68■■□□□ 1.86
COL3A1P02461 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC26.68■■□□□ 1.86
COL3A1P02461 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC26.68■■□□□ 1.86
COL3A1P02461 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
COL3A1P02461 AL162377.1-201ENST00000618844 1793 ntBASIC26.67■■□□□ 1.86
COL3A1P02461 GABARAPL3-202ENST00000624044 1851 ntBASIC26.67■■□□□ 1.86
COL3A1P02461 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC26.67■■□□□ 1.86
COL3A1P02461 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL3A1P02461 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC26.67■■□□□ 1.86
COL3A1P02461 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL3A1P02461 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL3A1P02461 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC26.67■■□□□ 1.86
COL3A1P02461 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
COL3A1P02461 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
COL3A1P02461 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL3A1P02461 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC26.67■■□□□ 1.86
COL3A1P02461 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC26.67■■□□□ 1.86
COL3A1P02461 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL3A1P02461 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
COL3A1P02461 AL512408.1-201ENST00000569378 2000 ntBASIC26.66■■□□□ 1.86
COL3A1P02461 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC26.66■■□□□ 1.86
COL3A1P02461 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
COL3A1P02461 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
COL3A1P02461 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
COL3A1P02461 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC26.66■■□□□ 1.86
COL3A1P02461 TREX2-204ENST00000370212 861 ntTSL 5 BASIC26.66■■□□□ 1.86
COL3A1P02461 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC26.66■■□□□ 1.86
COL3A1P02461 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC26.66■■□□□ 1.86
COL3A1P02461 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
COL3A1P02461 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC26.66■■□□□ 1.86
COL3A1P02461 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC26.66■■□□□ 1.86
COL3A1P02461 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC26.66■■□□□ 1.86
COL3A1P02461 AL023875.1-201ENST00000640777 796 ntBASIC26.66■■□□□ 1.86
COL3A1P02461 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC26.66■■□□□ 1.86
COL3A1P02461 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC26.66■■□□□ 1.86
COL3A1P02461 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC26.66■■□□□ 1.86
COL3A1P02461 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
COL3A1P02461 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
COL3A1P02461 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
COL3A1P02461 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
COL3A1P02461 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC26.65■■□□□ 1.86
COL3A1P02461 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC26.65■■□□□ 1.86
COL3A1P02461 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
COL3A1P02461 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
COL3A1P02461 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
COL3A1P02461 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
COL3A1P02461 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
COL3A1P02461 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC26.65■■□□□ 1.86
COL3A1P02461 MAX-217ENST00000557277 728 ntTSL 3 BASIC26.65■■□□□ 1.86
COL3A1P02461 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
COL3A1P02461 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
COL3A1P02461 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
COL3A1P02461 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
COL3A1P02461 HLA-G-202ENST00000376815 851 ntBASIC26.64■■□□□ 1.86
COL3A1P02461 HLA-G-203ENST00000376818 1127 ntBASIC26.64■■□□□ 1.86
COL3A1P02461 KRASP1-201ENST00000407852 552 ntBASIC26.64■■□□□ 1.86
COL3A1P02461 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC26.64■■□□□ 1.86
COL3A1P02461 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC26.64■■□□□ 1.86
COL3A1P02461 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
COL3A1P02461 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC26.64■■□□□ 1.86
COL3A1P02461 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
COL3A1P02461 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC26.64■■□□□ 1.86
COL3A1P02461 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.85
COL3A1P02461 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
COL3A1P02461 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC26.64■■□□□ 1.85
COL3A1P02461 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
COL3A1P02461 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC26.64■■□□□ 1.85
COL3A1P02461 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
COL3A1P02461 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
COL3A1P02461 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
COL3A1P02461 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
COL3A1P02461 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
COL3A1P02461 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC26.63■■□□□ 1.85
COL3A1P02461 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC26.63■■□□□ 1.85
COL3A1P02461 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
COL3A1P02461 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC26.63■■□□□ 1.85
COL3A1P02461 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC26.62■■□□□ 1.85
COL3A1P02461 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
COL3A1P02461 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC26.62■■□□□ 1.85
COL3A1P02461 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC26.62■■□□□ 1.85
COL3A1P02461 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC26.62■■□□□ 1.85
COL3A1P02461 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC26.62■■□□□ 1.85
COL3A1P02461 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC26.62■■□□□ 1.85
COL3A1P02461 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC26.62■■□□□ 1.85
COL3A1P02461 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
COL3A1P02461 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
COL3A1P02461 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
COL3A1P02461 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
COL3A1P02461 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC26.62■■□□□ 1.85
COL3A1P02461 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
COL3A1P02461 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC26.62■■□□□ 1.85
COL3A1P02461 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
COL3A1P02461 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC26.62■■□□□ 1.85
COL3A1P02461 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC26.62■■□□□ 1.85
COL3A1P02461 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC26.62■■□□□ 1.85
COL3A1P02461 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC26.62■■□□□ 1.85
COL3A1P02461 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC26.62■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms