Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.22■□□□□ 0.67
SEMA3DO95025 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SEMA3DO95025 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SEMA3DO95025 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SEMA3DO95025 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SEMA3DO95025 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.22■□□□□ 0.67
SEMA3DO95025 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SEMA3DO95025 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SEMA3DO95025 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.22■□□□□ 0.67
SEMA3DO95025 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SEMA3DO95025 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SEMA3DO95025 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SEMA3DO95025 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SEMA3DO95025 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.22■□□□□ 0.67
SEMA3DO95025 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SEMA3DO95025 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SEMA3DO95025 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SEMA3DO95025 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SEMA3DO95025 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SEMA3DO95025 MIR663A-201ENST00000385250 93 ntBASIC19.21■□□□□ 0.67
SEMA3DO95025 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
SEMA3DO95025 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.21■□□□□ 0.67
SEMA3DO95025 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.21■□□□□ 0.67
SEMA3DO95025 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SEMA3DO95025 AL050303.2-201ENST00000619798 666 ntBASIC19.21■□□□□ 0.67
SEMA3DO95025 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.21■□□□□ 0.67
SEMA3DO95025 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SEMA3DO95025 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SEMA3DO95025 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SEMA3DO95025 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.21■□□□□ 0.67
SEMA3DO95025 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.21■□□□□ 0.67
SEMA3DO95025 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SEMA3DO95025 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.2■□□□□ 0.66
SEMA3DO95025 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SEMA3DO95025 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SEMA3DO95025 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SEMA3DO95025 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SEMA3DO95025 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.2■□□□□ 0.66
SEMA3DO95025 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SEMA3DO95025 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.2■□□□□ 0.66
SEMA3DO95025 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SEMA3DO95025 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SEMA3DO95025 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SEMA3DO95025 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SEMA3DO95025 AL355472.2-201ENST00000422958 438 ntBASIC19.2■□□□□ 0.66
SEMA3DO95025 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.2■□□□□ 0.66
SEMA3DO95025 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.2■□□□□ 0.66
SEMA3DO95025 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.2■□□□□ 0.66
SEMA3DO95025 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SEMA3DO95025 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SEMA3DO95025 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SEMA3DO95025 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SEMA3DO95025 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SEMA3DO95025 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SEMA3DO95025 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SEMA3DO95025 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SEMA3DO95025 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SEMA3DO95025 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SEMA3DO95025 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.19■□□□□ 0.66
SEMA3DO95025 PTBP1P-201ENST00000554374 1601 ntBASIC19.19■□□□□ 0.66
SEMA3DO95025 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.19■□□□□ 0.66
SEMA3DO95025 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SEMA3DO95025 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SEMA3DO95025 AF201337.1-201ENST00000520239 748 ntBASIC19.19■□□□□ 0.66
SEMA3DO95025 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.19■□□□□ 0.66
SEMA3DO95025 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.19■□□□□ 0.66
SEMA3DO95025 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
SEMA3DO95025 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SEMA3DO95025 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.19■□□□□ 0.66
SEMA3DO95025 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SEMA3DO95025 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.19■□□□□ 0.66
SEMA3DO95025 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SEMA3DO95025 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SEMA3DO95025 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SEMA3DO95025 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SEMA3DO95025 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SEMA3DO95025 CROCCP5-201ENST00000436658 830 ntBASIC19.18■□□□□ 0.66
SEMA3DO95025 HES2-205ENST00000487437 968 ntTSL 3 BASIC19.18■□□□□ 0.66
SEMA3DO95025 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.18■□□□□ 0.66
SEMA3DO95025 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SEMA3DO95025 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SEMA3DO95025 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
SEMA3DO95025 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.18■□□□□ 0.66
SEMA3DO95025 BX119927.1-201ENST00000636596 1552 ntBASIC19.18■□□□□ 0.66
SEMA3DO95025 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SEMA3DO95025 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SEMA3DO95025 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SEMA3DO95025 TCF3P1-201ENST00000423021 1937 ntBASIC19.17■□□□□ 0.66
SEMA3DO95025 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.17■□□□□ 0.66
SEMA3DO95025 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.17■□□□□ 0.66
SEMA3DO95025 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.17■□□□□ 0.66
SEMA3DO95025 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.17■□□□□ 0.66
SEMA3DO95025 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SEMA3DO95025 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SEMA3DO95025 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.17■□□□□ 0.66
SEMA3DO95025 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SEMA3DO95025 KRT17P1-201ENST00000399211 1546 ntBASIC19.17■□□□□ 0.66
SEMA3DO95025 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC19.17■□□□□ 0.66
SEMA3DO95025 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SEMA3DO95025 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms