Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 MTND2P3-201ENST00000452458 470 ntBASIC27■■□□□ 1.91
MSH5O43196 NAA50-208ENST00000497255 789 ntTSL 5 BASIC27■■□□□ 1.91
MSH5O43196 AL034346.1-201ENST00000568244 1277 ntBASIC27■■□□□ 1.91
MSH5O43196 AC008403.3-201ENST00000598924 454 ntBASIC27■■□□□ 1.91
MSH5O43196 AC022960.2-201ENST00000616300 666 ntBASIC27■■□□□ 1.91
MSH5O43196 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
MSH5O43196 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC27■■□□□ 1.91
MSH5O43196 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
MSH5O43196 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
MSH5O43196 LINC01960-201ENST00000563759 1884 ntBASIC27■■□□□ 1.91
MSH5O43196 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC27■■□□□ 1.91
MSH5O43196 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
MSH5O43196 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC26.99■■□□□ 1.91
MSH5O43196 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC26.99■■□□□ 1.91
MSH5O43196 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC26.99■■□□□ 1.91
MSH5O43196 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
MSH5O43196 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC26.99■■□□□ 1.91
MSH5O43196 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC26.99■■□□□ 1.91
MSH5O43196 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC26.99■■□□□ 1.91
MSH5O43196 PBX1-209ENST00000485769 834 ntTSL 2 BASIC26.99■■□□□ 1.91
MSH5O43196 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC26.99■■□□□ 1.91
MSH5O43196 Z99916.2-201ENST00000604037 246 ntBASIC26.99■■□□□ 1.91
MSH5O43196 FGF8-207ENST00000618991 856 ntTSL 3 BASIC26.99■■□□□ 1.91
MSH5O43196 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC26.99■■□□□ 1.91
MSH5O43196 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC26.99■■□□□ 1.91
MSH5O43196 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC26.99■■□□□ 1.91
MSH5O43196 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
MSH5O43196 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC26.99■■□□□ 1.91
MSH5O43196 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC26.99■■□□□ 1.91
MSH5O43196 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC26.99■■□□□ 1.91
MSH5O43196 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
MSH5O43196 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC26.98■■□□□ 1.91
MSH5O43196 AFG3L1P-217ENST00000557444 2447 ntBASIC26.98■■□□□ 1.91
MSH5O43196 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
MSH5O43196 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC26.98■■□□□ 1.91
MSH5O43196 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
MSH5O43196 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC26.98■■□□□ 1.91
MSH5O43196 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC26.98■■□□□ 1.91
MSH5O43196 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC26.98■■□□□ 1.91
MSH5O43196 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
MSH5O43196 AC073578.4-201ENST00000623945 514 ntBASIC26.98■■□□□ 1.91
MSH5O43196 AP006587.3-201ENST00000525742 1516 ntBASIC26.98■■□□□ 1.91
MSH5O43196 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC26.98■■□□□ 1.91
MSH5O43196 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
MSH5O43196 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC26.98■■□□□ 1.91
MSH5O43196 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC26.98■■□□□ 1.91
MSH5O43196 RBM17P2-201ENST00000616397 1405 ntBASIC26.98■■□□□ 1.91
MSH5O43196 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC26.97■■□□□ 1.91
MSH5O43196 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC26.97■■□□□ 1.91
MSH5O43196 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC26.97■■□□□ 1.91
MSH5O43196 ART2BP-201ENST00000453501 499 ntBASIC26.97■■□□□ 1.91
MSH5O43196 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC26.97■■□□□ 1.91
MSH5O43196 RNF121-214ENST00000533380 870 ntTSL 3 BASIC26.97■■□□□ 1.91
MSH5O43196 AL031058.1-201ENST00000561592 888 ntBASIC26.97■■□□□ 1.91
MSH5O43196 AL162412.1-201ENST00000567129 965 ntBASIC26.97■■□□□ 1.91
MSH5O43196 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC26.97■■□□□ 1.91
MSH5O43196 AC010618.2-201ENST00000596192 460 ntTSL 3 BASIC26.97■■□□□ 1.91
MSH5O43196 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC26.97■■□□□ 1.91
MSH5O43196 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
MSH5O43196 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
MSH5O43196 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
MSH5O43196 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
MSH5O43196 RARG-204ENST00000543726 1779 ntTSL 2 BASIC26.97■■□□□ 1.91
MSH5O43196 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC26.96■■□□□ 1.91
MSH5O43196 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
MSH5O43196 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC26.96■■□□□ 1.91
MSH5O43196 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
MSH5O43196 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC26.96■■□□□ 1.91
MSH5O43196 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
MSH5O43196 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC26.96■■□□□ 1.91
MSH5O43196 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
MSH5O43196 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC26.96■■□□□ 1.91
MSH5O43196 AC010181.2-201ENST00000483759 482 ntTSL 3 BASIC26.96■■□□□ 1.91
MSH5O43196 LINC01023-201ENST00000606054 436 ntBASIC26.96■■□□□ 1.91
MSH5O43196 METTL15-211ENST00000634762 718 ntTSL 5 BASIC26.96■■□□□ 1.91
MSH5O43196 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC26.96■■□□□ 1.91
MSH5O43196 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC26.96■■□□□ 1.91
MSH5O43196 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
MSH5O43196 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC26.95■■□□□ 1.91
MSH5O43196 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC26.95■■□□□ 1.91
MSH5O43196 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
MSH5O43196 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC26.95■■□□□ 1.91
MSH5O43196 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC26.95■■□□□ 1.9
MSH5O43196 POU5F1P4-201ENST00000413175 1085 ntBASIC26.95■■□□□ 1.9
MSH5O43196 AL355472.2-201ENST00000422958 438 ntBASIC26.95■■□□□ 1.9
MSH5O43196 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC26.95■■□□□ 1.9
MSH5O43196 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC26.95■■□□□ 1.9
MSH5O43196 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
MSH5O43196 AL158050.2-201ENST00000605336 568 ntBASIC26.95■■□□□ 1.9
MSH5O43196 AC069503.1-202ENST00000616576 642 ntBASIC26.95■■□□□ 1.9
MSH5O43196 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC26.95■■□□□ 1.9
MSH5O43196 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
MSH5O43196 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC26.95■■□□□ 1.9
MSH5O43196 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC26.95■■□□□ 1.9
MSH5O43196 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC26.95■■□□□ 1.9
MSH5O43196 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC26.95■■□□□ 1.9
MSH5O43196 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
MSH5O43196 FEM1AP4-201ENST00000443167 1987 ntBASIC26.95■■□□□ 1.9
MSH5O43196 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
MSH5O43196 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms