Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
COL6A5A8TX70 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC15.74■□□□□ 0.11
COL6A5A8TX70 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
COL6A5A8TX70 AC104692.2-201ENST00000603054 253 ntBASIC15.74■□□□□ 0.11
COL6A5A8TX70 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC15.74■□□□□ 0.11
COL6A5A8TX70 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC15.74■□□□□ 0.11
COL6A5A8TX70 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC15.74■□□□□ 0.11
COL6A5A8TX70 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL6A5A8TX70 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
COL6A5A8TX70 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL6A5A8TX70 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL6A5A8TX70 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL6A5A8TX70 CFL1-212ENST00000531413 636 ntTSL 3 BASIC15.73■□□□□ 0.11
COL6A5A8TX70 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL6A5A8TX70 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC15.73■□□□□ 0.11
COL6A5A8TX70 HYMAI.1-201ENST00000620949 238 ntBASIC15.73■□□□□ 0.11
COL6A5A8TX70 ABBA01031674.1-201ENST00000635145 728 ntBASIC15.73■□□□□ 0.11
COL6A5A8TX70 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL6A5A8TX70 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC15.73■□□□□ 0.11
COL6A5A8TX70 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL6A5A8TX70 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC15.73■□□□□ 0.11
COL6A5A8TX70 STK25-205ENST00000405883 1904 ntTSL 2 BASIC15.73■□□□□ 0.11
COL6A5A8TX70 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL6A5A8TX70 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL6A5A8TX70 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL6A5A8TX70 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC15.73■□□□□ 0.11
COL6A5A8TX70 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC15.73■□□□□ 0.11
COL6A5A8TX70 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC15.73■□□□□ 0.11
COL6A5A8TX70 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC15.73■□□□□ 0.11
COL6A5A8TX70 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL6A5A8TX70 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC15.73■□□□□ 0.11
COL6A5A8TX70 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL6A5A8TX70 AL356652.1-201ENST00000615962 565 ntBASIC15.73■□□□□ 0.11
COL6A5A8TX70 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC15.73■□□□□ 0.11
COL6A5A8TX70 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
COL6A5A8TX70 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL6A5A8TX70 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC15.72■□□□□ 0.11
COL6A5A8TX70 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL6A5A8TX70 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC15.72■□□□□ 0.11
COL6A5A8TX70 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
COL6A5A8TX70 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC15.72■□□□□ 0.11
COL6A5A8TX70 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC15.72■□□□□ 0.11
COL6A5A8TX70 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC15.72■□□□□ 0.11
COL6A5A8TX70 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL6A5A8TX70 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
COL6A5A8TX70 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL6A5A8TX70 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL6A5A8TX70 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL6A5A8TX70 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC15.72■□□□□ 0.11
COL6A5A8TX70 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL6A5A8TX70 KRT18P13-201ENST00000400056 1290 ntBASIC15.72■□□□□ 0.11
COL6A5A8TX70 PMS2P1-201ENST00000431037 1228 ntBASIC15.72■□□□□ 0.11
COL6A5A8TX70 AL136038.3-201ENST00000561909 1096 ntBASIC15.72■□□□□ 0.11
COL6A5A8TX70 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC15.72■□□□□ 0.11
COL6A5A8TX70 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC15.72■□□□□ 0.11
COL6A5A8TX70 AL355385.1-201ENST00000606123 409 ntBASIC15.72■□□□□ 0.11
COL6A5A8TX70 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL6A5A8TX70 NPAP1P7-201ENST00000613027 823 ntBASIC15.72■□□□□ 0.11
COL6A5A8TX70 AL031432.5-201ENST00000641059 760 ntBASIC15.72■□□□□ 0.11
COL6A5A8TX70 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC15.72■□□□□ 0.11
COL6A5A8TX70 AC026471.6-201ENST00000622954 1905 ntBASIC15.72■□□□□ 0.11
COL6A5A8TX70 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC15.72■□□□□ 0.11
COL6A5A8TX70 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC15.71■□□□□ 0.11
COL6A5A8TX70 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL6A5A8TX70 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
COL6A5A8TX70 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL6A5A8TX70 RPP21-221ENST00000428040 594 ntTSL 2 BASIC15.71■□□□□ 0.11
COL6A5A8TX70 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC15.71■□□□□ 0.11
COL6A5A8TX70 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL6A5A8TX70 CCR12P-201ENST00000446203 998 ntBASIC15.71■□□□□ 0.11
COL6A5A8TX70 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC15.71■□□□□ 0.11
COL6A5A8TX70 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC15.71■□□□□ 0.11
COL6A5A8TX70 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC15.71■□□□□ 0.11
COL6A5A8TX70 MIR3180-1-201ENST00000580374 94 ntBASIC15.71■□□□□ 0.11
COL6A5A8TX70 MIR3180-3-201ENST00000584616 94 ntBASIC15.71■□□□□ 0.11
COL6A5A8TX70 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL6A5A8TX70 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
COL6A5A8TX70 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
COL6A5A8TX70 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC15.71■□□□□ 0.11
COL6A5A8TX70 TEX30-205ENST00000376029 959 ntTSL 2 BASIC15.71■□□□□ 0.11
COL6A5A8TX70 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC15.71■□□□□ 0.11
COL6A5A8TX70 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC15.71■□□□□ 0.11
COL6A5A8TX70 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC15.71■□□□□ 0.11
COL6A5A8TX70 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
COL6A5A8TX70 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
COL6A5A8TX70 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC15.7■□□□□ 0.1
COL6A5A8TX70 AC139530.1-201ENST00000575312 1977 ntBASIC15.7■□□□□ 0.1
COL6A5A8TX70 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A5A8TX70 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC15.7■□□□□ 0.1
COL6A5A8TX70 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC15.7■□□□□ 0.1
COL6A5A8TX70 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A5A8TX70 AC083849.1-201ENST00000615227 514 ntBASIC15.7■□□□□ 0.1
COL6A5A8TX70 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC15.7■□□□□ 0.1
COL6A5A8TX70 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A5A8TX70 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A5A8TX70 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
COL6A5A8TX70 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC15.7■□□□□ 0.1
COL6A5A8TX70 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A5A8TX70 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A5A8TX70 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms