Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC087645.1-201ENST00000588528 291 ntBASIC6.58□□□□□ -1.36
NKX3-1Q99801 ZNF85-206ENST00000596476 1259 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
NKX3-1Q99801 TATDN1-220ENST00000605953 726 ntTSL 2 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 LINC00635-221ENST00000609366 784 ntTSL 5 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 UBE2Q2P6-202ENST00000617217 443 ntTSL 5 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 AC025162.2-201ENST00000619602 560 ntBASIC6.58□□□□□ -1.36
NKX3-1Q99801 MIR8089-201ENST00000620165 82 ntBASIC6.58□□□□□ -1.36
NKX3-1Q99801 CU638689.4-203ENST00000625185 785 ntTSL 5 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 AC024475.4-201ENST00000635144 1206 ntTSL 5 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 KLF8-206ENST00000640927 1150 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
NKX3-1Q99801 OR13D1-202ENST00000641530 945 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 LINC01197-205ENST00000614853 1774 ntTSL 3 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
NKX3-1Q99801 NSUN6-201ENST00000377304 2201 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
NKX3-1Q99801 PICALM-201ENST00000356360 1958 ntTSL 5 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 GPN1-203ENST00000424214 1725 ntTSL 2 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
NKX3-1Q99801 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
NKX3-1Q99801 CAPS2-205ENST00000409445 2135 ntTSL 2 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 CFHR5-201ENST00000256785 2810 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
NKX3-1Q99801 LINC00652-201ENST00000412553 3299 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
NKX3-1Q99801 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
NKX3-1Q99801 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 ZNF337-201ENST00000252979 3205 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
NKX3-1Q99801 PHLDB2-202ENST00000393925 5543 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
NKX3-1Q99801 LINC00184-201ENST00000429269 2270 ntTSL 2 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
NKX3-1Q99801 TMEFF2-203ENST00000409056 3364 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
NKX3-1Q99801 IL1RAP-201ENST00000072516 4697 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
NKX3-1Q99801 PDGFRA-206ENST00000508170 2202 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
NKX3-1Q99801 LMO7-205ENST00000377534 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
NKX3-1Q99801 AC024610.2-203ENST00000636084 1348 ntTSL 5 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 SLC2A3-201ENST00000075120 3915 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
NKX3-1Q99801 AC104162.1-201ENST00000430831 2382 ntBASIC6.57□□□□□ -1.36
NKX3-1Q99801 SYTL5-202ENST00000456733 4704 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
NKX3-1Q99801 MGAM-202ENST00000475668 9172 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 ZNF573-202ENST00000357309 2124 ntTSL 5 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 SMCP-201ENST00000368765 775 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
NKX3-1Q99801 IMPG1-203ENST00000369963 868 ntTSL 5 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 PHF6-203ENST00000370800 1150 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
NKX3-1Q99801 VN2R17P-201ENST00000391712 832 ntBASIC6.57□□□□□ -1.36
NKX3-1Q99801 VDAC1P8-201ENST00000406025 853 ntBASIC6.57□□□□□ -1.36
NKX3-1Q99801 RN7SKP207-201ENST00000411204 303 ntBASIC6.57□□□□□ -1.36
NKX3-1Q99801 AC069213.1-202ENST00000417011 810 ntTSL 2 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 CLEC1A-203ENST00000420265 1165 ntAPPRIS ALT2 TSL 2 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 ZEB2-AS1-201ENST00000421083 453 ntTSL 2 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 AC092066.1-201ENST00000425131 317 ntBASIC6.57□□□□□ -1.36
NKX3-1Q99801 RANP5-201ENST00000427731 655 ntBASIC6.57□□□□□ -1.36
NKX3-1Q99801 AL137074.1-201ENST00000442640 465 ntBASIC6.57□□□□□ -1.36
NKX3-1Q99801 CD59-206ENST00000445143 825 ntAPPRIS P2 TSL 3 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 AC239798.1-201ENST00000449024 1176 ntBASIC6.57□□□□□ -1.36
NKX3-1Q99801 AL390026.1-201ENST00000456647 457 ntBASIC6.57□□□□□ -1.36
NKX3-1Q99801 AC013787.1-201ENST00000460165 307 ntBASIC6.57□□□□□ -1.36
NKX3-1Q99801 RN7SL241P-201ENST00000482973 236 ntBASIC6.57□□□□□ -1.36
NKX3-1Q99801 RN7SL153P-201ENST00000486501 292 ntBASIC6.57□□□□□ -1.36
NKX3-1Q99801 LINC02218-201ENST00000503267 529 ntTSL 2 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 AC008629.3-201ENST00000505786 586 ntBASIC6.57□□□□□ -1.36
NKX3-1Q99801 RPL37-205ENST00000509877 637 ntTSL 5 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 AC022296.2-201ENST00000512424 202 ntBASIC6.57□□□□□ -1.36
NKX3-1Q99801 AC113352.1-201ENST00000513196 666 ntBASIC6.57□□□□□ -1.36
NKX3-1Q99801 NSMCE2-208ENST00000520866 1183 ntTSL 2 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 BTF3P1-201ENST00000522014 495 ntBASIC6.57□□□□□ -1.36
NKX3-1Q99801 ZNF345-205ENST00000526123 458 ntTSL 3 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 PTPRJ-AS1-201ENST00000533964 301 ntTSL 5 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 CLEC4E-206ENST00000545274 730 ntTSL 3 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 AC005230.1-201ENST00000555418 285 ntBASIC6.57□□□□□ -1.36
NKX3-1Q99801 AC092757.2-201ENST00000559026 633 ntTSL 4 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 BLID-201ENST00000560104 862 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 AC018946.1-201ENST00000560578 458 ntTSL 5 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 RN7SL664P-201ENST00000584239 305 ntBASIC6.57□□□□□ -1.36
NKX3-1Q99801 AC010320.1-201ENST00000599775 578 ntTSL 3 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 AC243772.3-202ENST00000609662 1148 ntBASIC6.57□□□□□ -1.36
NKX3-1Q99801 AL109933.4-201ENST00000612111 157 ntBASIC6.57□□□□□ -1.36
NKX3-1Q99801 AC123788.2-201ENST00000612290 283 ntBASIC6.57□□□□□ -1.36
NKX3-1Q99801 LZTS1-204ENST00000616228 231 ntTSL 2 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 AC073488.2-201ENST00000631903 751 ntBASIC6.57□□□□□ -1.36
NKX3-1Q99801 LINC01359-205ENST00000634604 1050 ntTSL 5 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 AC010653.3-201ENST00000635332 232 ntBASIC6.57□□□□□ -1.36
NKX3-1Q99801 TPK1-214ENST00000639328 826 ntTSL 5 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 AC241585.4-201ENST00000640951 686 ntBASIC6.57□□□□□ -1.36
NKX3-1Q99801 SP140-205ENST00000420434 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
NKX3-1Q99801 SP110-203ENST00000358662 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
NKX3-1Q99801 AL049697.1-201ENST00000507897 2301 ntAPPRIS P1 TSL 2 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 NF1P8-201ENST00000415351 1461 ntBASIC6.57□□□□□ -1.36
NKX3-1Q99801 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
NKX3-1Q99801 ERICH3-202ENST00000420661 2068 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
NKX3-1Q99801 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
NKX3-1Q99801 HAVCR1-205ENST00000523175 1449 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
NKX3-1Q99801 AC053481.2-201ENST00000602493 1815 ntTSL 5 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
NKX3-1Q99801 LRTOMT-210ENST00000447974 2007 ntTSL 2 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 LINC01772-201ENST00000457898 3245 ntTSL 2 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 AC022784.6-204ENST00000520390 3442 ntTSL 2 BASIC6.57□□□□□ -1.36
NKX3-1Q99801 CEP41-213ENST00000489512 3161 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
NKX3-1Q99801 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms