Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC090616.1-201ENST00000583895 447 ntBASIC8.26□□□□□ -1.09
MSX1P28360 MIR4440-201ENST00000583986 98 ntBASIC8.26□□□□□ -1.09
MSX1P28360 OR4G1P-201ENST00000588632 938 ntBASIC8.26□□□□□ -1.09
MSX1P28360 LSM1P2-201ENST00000604911 322 ntBASIC8.26□□□□□ -1.09
MSX1P28360 AC103724.4-201ENST00000605981 292 ntBASIC8.26□□□□□ -1.09
MSX1P28360 FO704657.1-201ENST00000607013 400 ntTSL 3 BASIC8.26□□□□□ -1.09
MSX1P28360 AC004067.1-201ENST00000608733 700 ntBASIC8.26□□□□□ -1.09
MSX1P28360 MIR6892-201ENST00000612346 115 ntBASIC8.26□□□□□ -1.09
MSX1P28360 AC100793.4-201ENST00000613683 429 ntBASIC8.26□□□□□ -1.09
MSX1P28360 DRP2-202ENST00000395209 7277 ntAPPRIS P3 TSL 1 (best) BASIC8.26□□□□□ -1.09
MSX1P28360 AC100827.3-201ENST00000566291 2155 ntBASIC8.26□□□□□ -1.09
MSX1P28360 CHCHD7-207ENST00000518801 1670 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
MSX1P28360 FNDC3A-206ENST00000541916 6328 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
MSX1P28360 ZNF45-201ENST00000269973 3898 ntAPPRIS P1 TSL 2 BASIC8.26□□□□□ -1.09
MSX1P28360 CCNT1-201ENST00000261900 6973 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
MSX1P28360 DHX29-201ENST00000251636 4502 ntAPPRIS P2 TSL 1 (best) BASIC8.26□□□□□ -1.09
MSX1P28360 LIPC-203ENST00000414170 2968 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
MSX1P28360 SLC9B2-204ENST00000503230 1826 ntTSL 2 BASIC8.26□□□□□ -1.09
MSX1P28360 CELF2-215ENST00000636488 3908 ntTSL 5 BASIC8.26□□□□□ -1.09
MSX1P28360 NHLRC3-203ENST00000470258 3298 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
MSX1P28360 PAX6-259ENST00000639916 2622 ntAPPRIS ALT1 TSL 1 (best) BASIC8.26□□□□□ -1.09
MSX1P28360 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
MSX1P28360 FCGR3B-204ENST00000531221 1339 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
MSX1P28360 KCNE1-201ENST00000337385 3347 ntAPPRIS P1 TSL 3 BASIC8.26□□□□□ -1.09
MSX1P28360 C14orf105-201ENST00000216445 3082 ntAPPRIS P3 TSL 1 (best) BASIC8.26□□□□□ -1.09
MSX1P28360 TMEM161B-201ENST00000296595 2594 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 ARHGEF9-201ENST00000253401 5413 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 NBPF19-203ENST00000578189 5034 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 IGFN1-202ENST00000335211 11810 ntAPPRIS P2 TSL 5 BASIC8.25□□□□□ -1.09
MSX1P28360 TNFRSF19-201ENST00000248484 3276 ntAPPRIS ALT2 TSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 CHCHD5-202ENST00000409719 3272 ntTSL 2 BASIC8.25□□□□□ -1.09
MSX1P28360 TNPO3-205ENST00000627585 4514 ntTSL 2 BASIC8.25□□□□□ -1.09
MSX1P28360 AMD1-201ENST00000368876 3040 ntTSL 5 BASIC8.25□□□□□ -1.09
MSX1P28360 WWC1-209ENST00000521089 3562 ntAPPRIS ALT1 TSL 2 BASIC8.25□□□□□ -1.09
MSX1P28360 PTPRT-204ENST00000373190 12559 ntAPPRIS ALT2 TSL 5 BASIC8.25□□□□□ -1.09
MSX1P28360 MTCO1P28-201ENST00000574177 1528 ntBASIC8.25□□□□□ -1.09
MSX1P28360 CLUAP1-212ENST00000576634 4163 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 ERMAP-202ENST00000372514 3369 ntAPPRIS P2 TSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 RNASE9-207ENST00000555230 2668 ntAPPRIS P3 TSL 2 BASIC8.25□□□□□ -1.09
MSX1P28360 AC079777.1-201ENST00000623836 1953 ntBASIC8.25□□□□□ -1.09
MSX1P28360 POGZ-203ENST00000368863 6054 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 Y_RNA.303-201ENST00000364998 94 ntBASIC8.25□□□□□ -1.09
MSX1P28360 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC8.25□□□□□ -1.09
MSX1P28360 RABL2A-201ENST00000376439 623 ntTSL 5 BASIC8.25□□□□□ -1.09
MSX1P28360 MGST1-205ENST00000396210 914 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 TOMM6-201ENST00000398881 595 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC8.25□□□□□ -1.09
MSX1P28360 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC8.25□□□□□ -1.09
MSX1P28360 AL359475.1-201ENST00000414505 292 ntTSL 3 BASIC8.25□□□□□ -1.09
MSX1P28360 AL135905.1-201ENST00000416120 801 ntBASIC8.25□□□□□ -1.09
MSX1P28360 FAM213AP1-201ENST00000418757 668 ntBASIC8.25□□□□□ -1.09
MSX1P28360 HNRNPA1P30-201ENST00000424329 751 ntTSL 3 BASIC8.25□□□□□ -1.09
MSX1P28360 ELOCP10-201ENST00000440624 327 ntBASIC8.25□□□□□ -1.09
MSX1P28360 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 RN7SL420P-201ENST00000463843 298 ntBASIC8.25□□□□□ -1.09
MSX1P28360 AC126615.1-201ENST00000470084 630 ntBASIC8.25□□□□□ -1.09
MSX1P28360 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC8.25□□□□□ -1.09
MSX1P28360 OR2A3P-201ENST00000493774 953 ntBASIC8.25□□□□□ -1.09
MSX1P28360 FCF1P3-201ENST00000496394 590 ntBASIC8.25□□□□□ -1.09
MSX1P28360 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 CBX3P3-201ENST00000508108 532 ntBASIC8.25□□□□□ -1.09
MSX1P28360 ENPP7P1-201ENST00000509557 999 ntBASIC8.25□□□□□ -1.09
MSX1P28360 AL645949.1-201ENST00000510094 324 ntBASIC8.25□□□□□ -1.09
MSX1P28360 AC026782.2-201ENST00000510845 636 ntBASIC8.25□□□□□ -1.09
MSX1P28360 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC8.25□□□□□ -1.09
MSX1P28360 AC107074.1-201ENST00000513617 764 ntTSL 3 BASIC8.25□□□□□ -1.09
MSX1P28360 RFESD-208ENST00000513950 464 ntTSL 5 BASIC8.25□□□□□ -1.09
MSX1P28360 ATOX1-202ENST00000520382 466 ntTSL 5 BASIC8.25□□□□□ -1.09
MSX1P28360 ATOX1-205ENST00000522314 724 ntTSL 2 BASIC8.25□□□□□ -1.09
MSX1P28360 AC091939.1-201ENST00000522704 691 ntTSL 3 BASIC8.25□□□□□ -1.09
MSX1P28360 AP002802.1-201ENST00000526154 342 ntTSL 3 BASIC8.25□□□□□ -1.09
MSX1P28360 AP001000.1-201ENST00000526843 742 ntBASIC8.25□□□□□ -1.09
MSX1P28360 MTND6P25-201ENST00000528711 516 ntBASIC8.25□□□□□ -1.09
MSX1P28360 AC084121.2-201ENST00000528788 264 ntBASIC8.25□□□□□ -1.09
MSX1P28360 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC8.25□□□□□ -1.09
MSX1P28360 ZNF519P3-201ENST00000557158 1032 ntBASIC8.25□□□□□ -1.09
MSX1P28360 AC009139.1-201ENST00000561672 652 ntTSL 2 BASIC8.25□□□□□ -1.09
MSX1P28360 AC106734.1-201ENST00000568646 663 ntBASIC8.25□□□□□ -1.09
MSX1P28360 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC8.25□□□□□ -1.09
MSX1P28360 AC008751.1-201ENST00000600438 342 ntBASIC8.25□□□□□ -1.09
MSX1P28360 AL583832.1-201ENST00000603227 784 ntBASIC8.25□□□□□ -1.09
MSX1P28360 ELOCP34-201ENST00000604436 327 ntBASIC8.25□□□□□ -1.09
MSX1P28360 CLPTM1LP1-201ENST00000604519 484 ntBASIC8.25□□□□□ -1.09
MSX1P28360 BNIP3P15-201ENST00000604600 301 ntBASIC8.25□□□□□ -1.09
MSX1P28360 AC007497.1-201ENST00000610421 561 ntBASIC8.25□□□□□ -1.09
MSX1P28360 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 AC009509.4-201ENST00000619202 509 ntBASIC8.25□□□□□ -1.09
MSX1P28360 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC8.25□□□□□ -1.09
MSX1P28360 SEPT14P19-203ENST00000633205 211 ntBASIC8.25□□□□□ -1.09
MSX1P28360 AL356479.1-203ENST00000411798 1440 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 GAB3-202ENST00000369575 4718 ntAPPRIS P3 TSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 MCM6-201ENST00000264156 3736 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 EYA3-201ENST00000373863 1729 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 PPARG-207ENST00000397015 1722 ntAPPRIS ALT1 TSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 ZSCAN31-202ENST00000396838 3176 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 KCTD16-202ENST00000512467 2313 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 RAD17-219ENST00000521422 2323 ntTSL 5 BASIC8.25□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms