Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC096915.1-201ENST00000456185 512 ntBASIC8.28□□□□□ -1.08
MSX1P28360 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC8.28□□□□□ -1.08
MSX1P28360 RPL12P5-201ENST00000475149 392 ntBASIC8.28□□□□□ -1.08
MSX1P28360 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
MSX1P28360 OR7E129P-201ENST00000504655 968 ntBASIC8.28□□□□□ -1.08
MSX1P28360 LINC01331-201ENST00000507781 568 ntTSL 4 BASIC8.28□□□□□ -1.08
MSX1P28360 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC8.28□□□□□ -1.08
MSX1P28360 AC091965.2-201ENST00000512324 613 ntBASIC8.28□□□□□ -1.08
MSX1P28360 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC8.28□□□□□ -1.08
MSX1P28360 AP000873.5-201ENST00000533906 236 ntBASIC8.28□□□□□ -1.08
MSX1P28360 AC006927.1-201ENST00000544818 498 ntBASIC8.28□□□□□ -1.08
MSX1P28360 AKIRIN1P1-201ENST00000547384 544 ntBASIC8.28□□□□□ -1.08
MSX1P28360 AC027288.3-203ENST00000553165 448 ntTSL 3 BASIC8.28□□□□□ -1.08
MSX1P28360 LINC01579-201ENST00000553818 561 ntTSL 4 BASIC8.28□□□□□ -1.08
MSX1P28360 AL133163.2-201ENST00000555024 624 ntTSL 3 BASIC8.28□□□□□ -1.08
MSX1P28360 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC8.28□□□□□ -1.08
MSX1P28360 LINC00929-205ENST00000557672 514 ntTSL 3 BASIC8.28□□□□□ -1.08
MSX1P28360 RN7SL353P-201ENST00000579902 252 ntBASIC8.28□□□□□ -1.08
MSX1P28360 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC8.28□□□□□ -1.08
MSX1P28360 AP001269.3-201ENST00000588718 329 ntBASIC8.28□□□□□ -1.08
MSX1P28360 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC8.28□□□□□ -1.08
MSX1P28360 AC087683.1-201ENST00000591187 441 ntBASIC8.28□□□□□ -1.08
MSX1P28360 VN1R92P-201ENST00000598511 928 ntBASIC8.28□□□□□ -1.08
MSX1P28360 AC112230.1-201ENST00000604342 547 ntBASIC8.28□□□□□ -1.08
MSX1P28360 OR2BH1P-201ENST00000608850 864 ntBASIC8.28□□□□□ -1.08
MSX1P28360 AC007450.2-201ENST00000614160 290 ntBASIC8.28□□□□□ -1.08
MSX1P28360 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC8.28□□□□□ -1.08
MSX1P28360 PKP4-218ENST00000629219 162 ntTSL 5 BASIC8.28□□□□□ -1.08
MSX1P28360 AL357140.4-201ENST00000636827 412 ntBASIC8.28□□□□□ -1.08
MSX1P28360 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC8.28□□□□□ -1.08
MSX1P28360 OR8G3P-202ENST00000641572 1255 ntBASIC8.28□□□□□ -1.08
MSX1P28360 AC079174.2-201ENST00000611145 2028 ntBASIC8.28□□□□□ -1.08
MSX1P28360 FAM193A-203ENST00000502458 4083 ntAPPRIS ALT2 TSL 1 (best) BASIC8.28□□□□□ -1.08
MSX1P28360 SMAP2-206ENST00000614549 2570 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
MSX1P28360 ZNF80-202ENST00000482457 2471 ntAPPRIS P1 BASIC8.28□□□□□ -1.08
MSX1P28360 ZSCAN23-201ENST00000289788 3126 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
MSX1P28360 TCF4-226ENST00000565018 2357 ntTSL 5 BASIC8.28□□□□□ -1.08
MSX1P28360 TRPC3-201ENST00000264811 3675 ntAPPRIS P3 TSL 1 (best) BASIC8.28□□□□□ -1.08
MSX1P28360 SEC24A-202ENST00000398844 6299 ntAPPRIS P1 TSL 2 BASIC8.28□□□□□ -1.08
MSX1P28360 LINC01660-204ENST00000619172 3572 ntTSL 5 BASIC8.28□□□□□ -1.08
MSX1P28360 STAB2-201ENST00000388887 8251 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
MSX1P28360 SLITRK3-202ENST00000475390 4555 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
MSX1P28360 EXOSC9-211ENST00000512454 1543 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
MSX1P28360 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC8.28□□□□□ -1.08
MSX1P28360 ZFYVE1-201ENST00000318876 4362 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
MSX1P28360 ASB8-205ENST00000536549 2610 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
MSX1P28360 CD59-203ENST00000415002 1878 ntAPPRIS P2 TSL 1 (best) BASIC8.28□□□□□ -1.08
MSX1P28360 ZNF641-202ENST00000448928 1856 ntTSL 2 BASIC8.28□□□□□ -1.08
MSX1P28360 NEK2P4-201ENST00000425793 1329 ntBASIC8.28□□□□□ -1.08
MSX1P28360 CTBP2P2-201ENST00000434549 1334 ntBASIC8.28□□□□□ -1.08
MSX1P28360 AC133561.2-202ENST00000561642 1301 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
MSX1P28360 AC074043.1-201ENST00000483126 1776 ntBASIC8.27□□□□□ -1.08
MSX1P28360 PSD3-203ENST00000428502 6330 ntTSL 1 (best) BASIC8.27□□□□□ -1.08
MSX1P28360 ZNF555-201ENST00000334241 8557 ntAPPRIS P3 TSL 1 (best) BASIC8.27□□□□□ -1.08
MSX1P28360 TFDP2-224ENST00000499676 9335 ntAPPRIS ALT2 TSL 1 (best) BASIC8.27□□□□□ -1.08
MSX1P28360 FBXL13-202ENST00000379305 2478 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
MSX1P28360 CCDC47-207ENST00000612558 1586 ntTSL 5 BASIC8.27□□□□□ -1.09
MSX1P28360 TCTN3-207ENST00000614499 2739 ntAPPRIS P2 TSL 1 (best) BASIC8.27□□□□□ -1.09
MSX1P28360 LINC01007-201ENST00000434537 2291 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
MSX1P28360 AC079341.1-201ENST00000567769 2266 ntBASIC8.27□□□□□ -1.09
MSX1P28360 ZNF30-204ENST00000601142 2280 ntAPPRIS ALT2 TSL 2 BASIC8.27□□□□□ -1.09
MSX1P28360 RNF14-205ENST00000394520 4235 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
MSX1P28360 ZNF844-201ENST00000439326 6620 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
MSX1P28360 BRDT-204ENST00000394530 3207 ntTSL 2 BASIC8.27□□□□□ -1.09
MSX1P28360 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
MSX1P28360 PDPN-201ENST00000294489 3104 ntAPPRIS P3 TSL 1 (best) BASIC8.27□□□□□ -1.09
MSX1P28360 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
MSX1P28360 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC8.27□□□□□ -1.09
MSX1P28360 COX17P1-201ENST00000378775 192 ntBASIC8.27□□□□□ -1.09
MSX1P28360 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC8.27□□□□□ -1.09
MSX1P28360 RPL23AP7-201ENST00000391616 738 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
MSX1P28360 AL031864.1-201ENST00000392075 423 ntBASIC8.27□□□□□ -1.09
MSX1P28360 AL590084.2-201ENST00000401481 382 ntBASIC8.27□□□□□ -1.09
MSX1P28360 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
MSX1P28360 AC097059.2-201ENST00000414039 592 ntTSL 3 BASIC8.27□□□□□ -1.09
MSX1P28360 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC8.27□□□□□ -1.09
MSX1P28360 CCDC58P2-201ENST00000417131 366 ntBASIC8.27□□□□□ -1.09
MSX1P28360 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
MSX1P28360 AL035250.1-201ENST00000424662 593 ntTSL 2 BASIC8.27□□□□□ -1.09
MSX1P28360 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC8.27□□□□□ -1.09
MSX1P28360 AL133410.1-202ENST00000431981 472 ntTSL 3 BASIC8.27□□□□□ -1.09
MSX1P28360 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC8.27□□□□□ -1.09
MSX1P28360 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC8.27□□□□□ -1.09
MSX1P28360 USP9YP35-201ENST00000435696 412 ntBASIC8.27□□□□□ -1.09
MSX1P28360 AL356277.3-202ENST00000436672 587 ntTSL 3 BASIC8.27□□□□□ -1.09
MSX1P28360 EPS15P1-201ENST00000448836 336 ntBASIC8.27□□□□□ -1.09
MSX1P28360 AL157714.1-201ENST00000448964 625 ntBASIC8.27□□□□□ -1.09
MSX1P28360 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC8.27□□□□□ -1.09
MSX1P28360 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC8.27□□□□□ -1.09
MSX1P28360 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC8.27□□□□□ -1.09
MSX1P28360 LINC00945-201ENST00000453716 753 ntTSL 5 BASIC8.27□□□□□ -1.09
MSX1P28360 AC020595.1-201ENST00000456446 533 ntTSL 3 BASIC8.27□□□□□ -1.09
MSX1P28360 ATP1B3-202ENST00000462082 837 ntTSL 3 BASIC8.27□□□□□ -1.09
MSX1P28360 AC026798.1-201ENST00000468490 482 ntBASIC8.27□□□□□ -1.09
MSX1P28360 AC139769.1-201ENST00000471224 1001 ntTSL 3 BASIC8.27□□□□□ -1.09
MSX1P28360 RN7SL800P-201ENST00000484823 280 ntBASIC8.27□□□□□ -1.09
MSX1P28360 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC8.27□□□□□ -1.09
MSX1P28360 AC108073.1-201ENST00000508231 674 ntBASIC8.27□□□□□ -1.09
MSX1P28360 AC109458.1-201ENST00000508858 316 ntBASIC8.27□□□□□ -1.09
MSX1P28360 AC116347.2-201ENST00000514912 523 ntBASIC8.27□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms