Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 CR392039.3-201ENST00000623236 227 ntTSL 5 BASIC8.95□□□□□ -0.98
HLA-DOAP06340 TATDN2P1-201ENST00000443767 2331 ntBASIC8.95□□□□□ -0.98
HLA-DOAP06340 BBS12-203ENST00000542236 3431 ntAPPRIS P1 TSL 2 BASIC8.95□□□□□ -0.98
HLA-DOAP06340 OR10AD1-201ENST00000310248 1305 ntAPPRIS P1 BASIC8.95□□□□□ -0.98
HLA-DOAP06340 SUN3-202ENST00000395572 1348 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
HLA-DOAP06340 AGBL4-203ENST00000371838 1353 ntAPPRIS ALT2 TSL 5 BASIC8.95□□□□□ -0.98
HLA-DOAP06340 HNRNPA1P54-201ENST00000411857 9714 ntBASIC8.95□□□□□ -0.98
HLA-DOAP06340 AC078795.1-201ENST00000602342 3143 ntBASIC8.95□□□□□ -0.98
HLA-DOAP06340 SLC4A4-203ENST00000351898 3771 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
HLA-DOAP06340 ZMYND8-203ENST00000352431 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC8.95□□□□□ -0.98
HLA-DOAP06340 SAMMSON-206ENST00000641053 1516 ntBASIC8.95□□□□□ -0.98
HLA-DOAP06340 PROX1-201ENST00000261454 8170 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
HLA-DOAP06340 Z97832.2-201ENST00000605896 4261 ntBASIC8.94□□□□□ -0.98
HLA-DOAP06340 KLHL32-202ENST00000369261 3698 ntAPPRIS P1 TSL 2 BASIC8.94□□□□□ -0.98
HLA-DOAP06340 LDAH-209ENST00000440866 3728 ntTSL 2 BASIC8.94□□□□□ -0.98
HLA-DOAP06340 KIF1B-203ENST00000377083 5885 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
HLA-DOAP06340 WDR19-201ENST00000399820 4520 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
HLA-DOAP06340 MED21-201ENST00000282892 1753 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
HLA-DOAP06340 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC8.94□□□□□ -0.98
HLA-DOAP06340 CD86-202ENST00000330540 2708 ntAPPRIS P3 TSL 1 (best) BASIC8.94□□□□□ -0.98
HLA-DOAP06340 AL627309.1-201ENST00000466430 2748 ntTSL 5 BASIC8.94□□□□□ -0.98
HLA-DOAP06340 PTBP3-203ENST00000343327 2755 ntTSL 2 BASIC8.94□□□□□ -0.98
HLA-DOAP06340 ORM1-201ENST00000259396 802 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
HLA-DOAP06340 RNU1-38P-201ENST00000362817 144 ntBASIC8.94□□□□□ -0.98
HLA-DOAP06340 NDUFV2-202ENST00000400033 942 ntTSL 3 BASIC8.94□□□□□ -0.98
HLA-DOAP06340 SLC25A5P7-201ENST00000406156 896 ntBASIC8.94□□□□□ -0.98
HLA-DOAP06340 FTOP1-201ENST00000419363 861 ntBASIC8.94□□□□□ -0.98
HLA-DOAP06340 CBWD5-209ENST00000430059 1242 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
HLA-DOAP06340 AL158214.1-201ENST00000444423 404 ntBASIC8.94□□□□□ -0.98
HLA-DOAP06340 AL136115.1-201ENST00000447478 517 ntTSL 2 BASIC8.94□□□□□ -0.98
HLA-DOAP06340 IGKV1D-32-201ENST00000517449 318 ntBASIC8.94□□□□□ -0.98
HLA-DOAP06340 C14orf159-213ENST00000519019 834 ntTSL 3 BASIC8.94□□□□□ -0.98
HLA-DOAP06340 RDH10-203ENST00000519380 978 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
HLA-DOAP06340 KDM1B-203ENST00000546309 496 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
HLA-DOAP06340 LINC01146-203ENST00000555996 459 ntTSL 2 BASIC8.94□□□□□ -0.98
HLA-DOAP06340 LINC01582-201ENST00000560195 560 ntTSL 4 BASIC8.94□□□□□ -0.98
HLA-DOAP06340 AC007950.1-201ENST00000560465 615 ntTSL 3 BASIC8.94□□□□□ -0.98
HLA-DOAP06340 MIR4437-201ENST00000581331 60 ntBASIC8.94□□□□□ -0.98
HLA-DOAP06340 AC011193.2-201ENST00000582638 367 ntBASIC8.94□□□□□ -0.98
HLA-DOAP06340 MIR3159-201ENST00000584572 74 ntBASIC8.94□□□□□ -0.98
HLA-DOAP06340 COPS3-203ENST00000439936 1394 ntTSL 5 BASIC8.94□□□□□ -0.98
HLA-DOAP06340 RHOJ-201ENST00000316754 3302 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
HLA-DOAP06340 AC015969.1-201ENST00000366218 1416 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
HLA-DOAP06340 NUMB-231ENST00000559312 1439 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
HLA-DOAP06340 RBM23-203ENST00000359890 10040 ntAPPRIS P4 TSL 1 (best) BASIC8.94□□□□□ -0.98
HLA-DOAP06340 CHRDL1-203ENST00000394797 2413 ntAPPRIS P3 TSL 5 BASIC8.94□□□□□ -0.98
HLA-DOAP06340 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC8.94□□□□□ -0.98
HLA-DOAP06340 AC016831.3-201ENST00000446451 1723 ntBASIC8.94□□□□□ -0.98
HLA-DOAP06340 DLG2-229ENST00000531015 2892 ntTSL 2 BASIC8.94□□□□□ -0.98
HLA-DOAP06340 BROX-209ENST00000612948 4028 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
HLA-DOAP06340 ZNF649-201ENST00000354957 3197 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
HLA-DOAP06340 CDY1-202ENST00000361963 2177 ntAPPRIS P1 BASIC8.93□□□□□ -0.98
HLA-DOAP06340 NUDT4-206ENST00000549992 3607 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
HLA-DOAP06340 TENM4-201ENST00000278550 14000 ntAPPRIS P1 TSL 5 BASIC8.93□□□□□ -0.98
HLA-DOAP06340 STC1-201ENST00000290271 3883 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
HLA-DOAP06340 AMPD1-201ENST00000369538 2392 ntAPPRIS ALT2 TSL 2 BASIC8.93□□□□□ -0.98
HLA-DOAP06340 CHRM3-201ENST00000255380 8780 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
HLA-DOAP06340 MYLK4-201ENST00000274643 5806 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
HLA-DOAP06340 LMO7-205ENST00000377534 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC8.93□□□□□ -0.98
HLA-DOAP06340 TTC41P-204ENST00000548897 2998 ntTSL 5 BASIC8.93□□□□□ -0.98
HLA-DOAP06340 OR2T12-202ENST00000641276 5708 ntAPPRIS P1 BASIC8.93□□□□□ -0.98
HLA-DOAP06340 CLASP2-213ENST00000480013 5972 ntTSL 5 BASIC8.93□□□□□ -0.98
HLA-DOAP06340 RBMX2P2-201ENST00000257020 946 ntBASIC8.93□□□□□ -0.98
HLA-DOAP06340 FCAR-204ENST00000359272 828 ntAPPRIS ALT2 TSL 1 (best) BASIC8.93□□□□□ -0.98
HLA-DOAP06340 RNU6-673P-201ENST00000365084 104 ntBASIC8.93□□□□□ -0.98
HLA-DOAP06340 RAET1G-201ENST00000367360 1107 ntAPPRIS P2 TSL 1 (best) BASIC8.93□□□□□ -0.98
HLA-DOAP06340 ARMCX7P-201ENST00000372828 562 ntBASIC8.93□□□□□ -0.98
HLA-DOAP06340 AL121781.1-201ENST00000419863 168 ntTSL 5 BASIC8.93□□□□□ -0.98
HLA-DOAP06340 AL590095.1-201ENST00000420049 436 ntTSL 3 BASIC8.93□□□□□ -0.98
HLA-DOAP06340 AF274573.1-201ENST00000430535 494 ntBASIC8.93□□□□□ -0.98
HLA-DOAP06340 ARL4AP4-201ENST00000434170 518 ntBASIC8.93□□□□□ -0.98
HLA-DOAP06340 HGF-206ENST00000444829 1184 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
HLA-DOAP06340 FTH1P7-201ENST00000450676 552 ntBASIC8.93□□□□□ -0.98
HLA-DOAP06340 AC018892.2-201ENST00000457656 693 ntBASIC8.93□□□□□ -0.98
HLA-DOAP06340 RN7SL688P-201ENST00000471754 275 ntBASIC8.93□□□□□ -0.98
HLA-DOAP06340 SYNPR-208ENST00000472899 527 ntTSL 4 BASIC8.93□□□□□ -0.98
HLA-DOAP06340 AL928654.1-201ENST00000476081 354 ntBASIC8.93□□□□□ -0.98
HLA-DOAP06340 AC008799.2-201ENST00000484429 647 ntBASIC8.93□□□□□ -0.98
HLA-DOAP06340 AC018639.1-201ENST00000492994 442 ntBASIC8.93□□□□□ -0.98
HLA-DOAP06340 SCARNA20.1-201ENST00000516009 138 ntBASIC8.93□□□□□ -0.98
HLA-DOAP06340 AC009869.1-201ENST00000530418 528 ntTSL 4 BASIC8.93□□□□□ -0.98
HLA-DOAP06340 SDHCP4-201ENST00000532834 510 ntBASIC8.93□□□□□ -0.98
HLA-DOAP06340 ARL6IP1-204ENST00000562819 578 ntTSL 5 BASIC8.93□□□□□ -0.98
HLA-DOAP06340 CYP4A44P-201ENST00000569984 154 ntBASIC8.93□□□□□ -0.98
HLA-DOAP06340 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC8.93□□□□□ -0.98
HLA-DOAP06340 AL451085.1-201ENST00000604546 690 ntBASIC8.93□□□□□ -0.98
HLA-DOAP06340 CCL23-203ENST00000615050 624 ntAPPRIS P3 TSL 1 (best) BASIC8.93□□□□□ -0.98
HLA-DOAP06340 ZNF484-203ENST00000395505 3960 ntAPPRIS ALT2 TSL 2 BASIC8.93□□□□□ -0.98
HLA-DOAP06340 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
HLA-DOAP06340 LINC00920-201ENST00000499966 2147 ntTSL 2 BASIC8.93□□□□□ -0.98
HLA-DOAP06340 AC036108.4-201ENST00000611654 2516 ntBASIC8.93□□□□□ -0.98
HLA-DOAP06340 ANKRD30A-205ENST00000611781 4474 ntAPPRIS ALT2 TSL 5 BASIC8.93□□□□□ -0.98
HLA-DOAP06340 AL590065.1-201ENST00000603371 4774 ntBASIC8.92□□□□□ -0.98
HLA-DOAP06340 SLC13A3-202ENST00000290317 3994 ntTSL 5 BASIC8.92□□□□□ -0.98
HLA-DOAP06340 TTI1-201ENST00000373447 3825 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
HLA-DOAP06340 DHX8-202ENST00000540306 3809 ntTSL 2 BASIC8.92□□□□□ -0.98
HLA-DOAP06340 OR2H2-202ENST00000641840 3061 ntAPPRIS P1 BASIC8.92□□□□□ -0.98
HLA-DOAP06340 DLG2-218ENST00000524982 2872 ntTSL 2 BASIC8.92□□□□□ -0.98
HLA-DOAP06340 C15orf41-202ENST00000437989 2240 ntAPPRIS P3 TSL 1 (best) BASIC8.92□□□□□ -0.98
HLA-DOAP06340 GPR19-201ENST00000332427 1743 ntAPPRIS P1 TSL 4 BASIC8.92□□□□□ -0.98
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms