Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 TAS2R60-201ENST00000332690 957 ntAPPRIS P1 BASIC8.3□□□□□ -1.08
MSX1P28360 KRTAP13-4-201ENST00000334068 797 ntAPPRIS P1 BASIC8.3□□□□□ -1.08
MSX1P28360 ST3GAL3-211ENST00000361812 513 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
MSX1P28360 LINC00272-201ENST00000367563 740 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
MSX1P28360 Y_RNA.578-201ENST00000390903 88 ntBASIC8.3□□□□□ -1.08
MSX1P28360 FIGN-202ENST00000409634 746 ntTSL 5 BASIC8.3□□□□□ -1.08
MSX1P28360 EIF3KP2-201ENST00000415266 626 ntBASIC8.3□□□□□ -1.08
MSX1P28360 AL138828.1-207ENST00000417643 734 ntTSL 5 BASIC8.3□□□□□ -1.08
MSX1P28360 AL035420.1-201ENST00000430679 458 ntTSL 5 BASIC8.3□□□□□ -1.08
MSX1P28360 BX119904.1-201ENST00000432026 348 ntBASIC8.3□□□□□ -1.08
MSX1P28360 AL358976.1-201ENST00000437555 392 ntBASIC8.3□□□□□ -1.08
MSX1P28360 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC8.3□□□□□ -1.08
MSX1P28360 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC8.3□□□□□ -1.08
MSX1P28360 CDC27P1-201ENST00000445384 715 ntBASIC8.3□□□□□ -1.08
MSX1P28360 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC8.3□□□□□ -1.08
MSX1P28360 PGA5-202ENST00000451616 971 ntTSL 2 BASIC8.3□□□□□ -1.08
MSX1P28360 GAPDHP45-201ENST00000452090 349 ntBASIC8.3□□□□□ -1.08
MSX1P28360 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC8.3□□□□□ -1.08
MSX1P28360 MCHR2-AS1-204ENST00000452482 821 ntTSL 3 BASIC8.3□□□□□ -1.08
MSX1P28360 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC8.3□□□□□ -1.08
MSX1P28360 NPSR1-208ENST00000465305 814 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
MSX1P28360 AC080188.1-201ENST00000491923 567 ntBASIC8.3□□□□□ -1.08
MSX1P28360 AL590867.2-201ENST00000492974 447 ntBASIC8.3□□□□□ -1.08
MSX1P28360 AC138853.1-201ENST00000503549 823 ntBASIC8.3□□□□□ -1.08
MSX1P28360 ASS1P8-201ENST00000504437 647 ntBASIC8.3□□□□□ -1.08
MSX1P28360 AC106795.1-207ENST00000507037 1123 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
MSX1P28360 AC093770.1-201ENST00000511559 571 ntBASIC8.3□□□□□ -1.08
MSX1P28360 AC010285.3-201ENST00000511668 676 ntBASIC8.3□□□□□ -1.08
MSX1P28360 COX6C-203ENST00000518171 724 ntAPPRIS P1 TSL 2 BASIC8.3□□□□□ -1.08
MSX1P28360 OSGEPL1-AS1-201ENST00000520651 508 ntTSL 2 BASIC8.3□□□□□ -1.08
MSX1P28360 AC023403.1-202ENST00000521139 759 ntTSL 3 BASIC8.3□□□□□ -1.08
MSX1P28360 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC8.3□□□□□ -1.08
MSX1P28360 ZNF252P-203ENST00000527222 876 ntTSL 2 BASIC8.3□□□□□ -1.08
MSX1P28360 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC8.3□□□□□ -1.08
MSX1P28360 AC234917.1-201ENST00000534006 316 ntTSL 3 BASIC8.3□□□□□ -1.08
MSX1P28360 AC016957.1-201ENST00000534895 309 ntBASIC8.3□□□□□ -1.08
MSX1P28360 UBB-204ENST00000535788 704 ntTSL 2 BASIC8.3□□□□□ -1.08
MSX1P28360 RTN4IP1-204ENST00000539449 814 ntTSL 2 BASIC8.3□□□□□ -1.08
MSX1P28360 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC8.3□□□□□ -1.08
MSX1P28360 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC8.3□□□□□ -1.08
MSX1P28360 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC8.3□□□□□ -1.08
MSX1P28360 AC022662.1-201ENST00000580252 331 ntBASIC8.3□□□□□ -1.08
MSX1P28360 AC004147.5-201ENST00000581727 536 ntBASIC8.3□□□□□ -1.08
MSX1P28360 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC8.3□□□□□ -1.08
MSX1P28360 LAMTOR5-AS1-211ENST00000598350 749 ntTSL 5 BASIC8.3□□□□□ -1.08
MSX1P28360 AL137072.1-201ENST00000603444 466 ntBASIC8.3□□□□□ -1.08
MSX1P28360 BMS1P14-201ENST00000615056 606 ntTSL 5 BASIC8.3□□□□□ -1.08
MSX1P28360 AL109614.1-201ENST00000620327 419 ntBASIC8.3□□□□□ -1.08
MSX1P28360 SGO1-AS1-206ENST00000635369 442 ntTSL 5 BASIC8.3□□□□□ -1.08
MSX1P28360 GPATCH11-202ENST00000409774 3906 ntAPPRIS P1 TSL 2 BASIC8.3□□□□□ -1.08
MSX1P28360 PTAFR-202ENST00000373857 4491 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
MSX1P28360 VPS8-204ENST00000424463 2359 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
MSX1P28360 ABCG1-204ENST00000398437 3475 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
MSX1P28360 FO082842.1-201ENST00000423552 1370 ntBASIC8.3□□□□□ -1.08
MSX1P28360 ALDOB-203ENST00000616752 1391 ntTSL 5 BASIC8.3□□□□□ -1.08
MSX1P28360 ZNF432-201ENST00000221315 2577 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
MSX1P28360 MAK-201ENST00000313243 3984 ntAPPRIS P1 TSL 5 BASIC8.3□□□□□ -1.08
MSX1P28360 BARD1-213ENST00000619009 3967 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
MSX1P28360 NPSR1-202ENST00000360581 1567 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
MSX1P28360 HLF-208ENST00000573945 2977 ntTSL 5 BASIC8.3□□□□□ -1.08
MSX1P28360 COPS4-209ENST00000511653 1695 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
MSX1P28360 AMMECR1L-201ENST00000272647 4658 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
MSX1P28360 VPS11-206ENST00000614944 3388 ntTSL 2 BASIC8.3□□□□□ -1.08
MSX1P28360 OTOA-201ENST00000286149 3471 ntAPPRIS ALT2 TSL 5 BASIC8.3□□□□□ -1.08
MSX1P28360 RPA1-201ENST00000254719 4340 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
MSX1P28360 C10orf126-202ENST00000614533 1968 ntAPPRIS P1 TSL 5 BASIC8.3□□□□□ -1.08
MSX1P28360 ANKRD20A21P-202ENST00000623715 3588 ntBASIC8.3□□□□□ -1.08
MSX1P28360 EEF1A1P21-201ENST00000512363 1344 ntBASIC8.29□□□□□ -1.08
MSX1P28360 HERC2P3-206ENST00000429257 4088 ntBASIC8.29□□□□□ -1.08
MSX1P28360 THAP12P3-201ENST00000456373 2266 ntBASIC8.29□□□□□ -1.08
MSX1P28360 AP002748.4-201ENST00000419755 3547 ntAPPRIS P1 TSL 2 BASIC8.29□□□□□ -1.08
MSX1P28360 AC002480.4-201ENST00000414116 2592 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
MSX1P28360 ANO2-201ENST00000327087 3720 ntAPPRIS ALT2 TSL 5 BASIC8.29□□□□□ -1.08
MSX1P28360 GPD2-202ENST00000409125 2661 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
MSX1P28360 LINC01761-201ENST00000424943 2755 ntTSL 2 BASIC8.29□□□□□ -1.08
MSX1P28360 C4orf26-205ENST00000616557 1725 ntTSL 3 BASIC8.29□□□□□ -1.08
MSX1P28360 MED7-201ENST00000286317 2402 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
MSX1P28360 TARS-204ENST00000502553 2534 ntAPPRIS P1 TSL 2 BASIC8.29□□□□□ -1.08
MSX1P28360 LSAMP-205ENST00000490035 9446 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
MSX1P28360 AP002884.3-201ENST00000504610 2749 ntTSL 2 BASIC8.29□□□□□ -1.08
MSX1P28360 CPEB1-209ENST00000614918 4882 ntTSL 5 BASIC8.29□□□□□ -1.08
MSX1P28360 C5orf66-205ENST00000555438 3246 ntTSL 3 BASIC8.29□□□□□ -1.08
MSX1P28360 ZBTB43-203ENST00000449886 5851 ntAPPRIS P1 TSL 3 BASIC8.29□□□□□ -1.08
MSX1P28360 OR5M9-201ENST00000279791 933 ntAPPRIS P1 BASIC8.29□□□□□ -1.08
MSX1P28360 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
MSX1P28360 RNU1-7P-201ENST00000364105 164 ntBASIC8.29□□□□□ -1.08
MSX1P28360 SMIM9-201ENST00000369529 904 ntAPPRIS P1 TSL 5 BASIC8.29□□□□□ -1.08
MSX1P28360 RPL24-201ENST00000394077 623 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
MSX1P28360 RNASE1-203ENST00000397970 769 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
MSX1P28360 CHMP1B2P-201ENST00000399581 597 ntBASIC8.29□□□□□ -1.08
MSX1P28360 TAF9BP2-201ENST00000400856 499 ntBASIC8.29□□□□□ -1.08
MSX1P28360 IGKV1OR2-3-201ENST00000411475 288 ntBASIC8.29□□□□□ -1.08
MSX1P28360 MKX-AS1-201ENST00000412244 745 ntTSL 3 BASIC8.29□□□□□ -1.08
MSX1P28360 SNRPE-202ENST00000414487 942 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
MSX1P28360 AL158825.1-201ENST00000414735 521 ntBASIC8.29□□□□□ -1.08
MSX1P28360 GCNT1P1-201ENST00000416567 1295 ntBASIC8.29□□□□□ -1.08
MSX1P28360 AC004074.1-201ENST00000421810 1063 ntBASIC8.29□□□□□ -1.08
MSX1P28360 GYG1P2-201ENST00000426437 1006 ntBASIC8.29□□□□□ -1.08
MSX1P28360 AC091132.2-201ENST00000433601 769 ntTSL 3 BASIC8.29□□□□□ -1.08
MSX1P28360 FABP5P10-201ENST00000435729 408 ntBASIC8.29□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms