Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 EEF1DP3-203ENST00000566025 782 ntBASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 MIR4767-201ENST00000582827 78 ntBASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 AC053503.5-201ENST00000601508 636 ntBASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 AC026471.1-201ENST00000564629 3026 ntBASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USH1CQ9Y6N9 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
USH1CQ9Y6N9 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USH1CQ9Y6N9 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USH1CQ9Y6N9 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USH1CQ9Y6N9 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USH1CQ9Y6N9 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
USH1CQ9Y6N9 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
USH1CQ9Y6N9 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USH1CQ9Y6N9 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.96■□□□□ 0.79
USH1CQ9Y6N9 AC131281.2-201ENST00000520478 145 ntBASIC19.96■□□□□ 0.79
USH1CQ9Y6N9 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.96■□□□□ 0.79
USH1CQ9Y6N9 AC105233.4-201ENST00000642045 216 ntBASIC19.96■□□□□ 0.79
USH1CQ9Y6N9 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USH1CQ9Y6N9 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USH1CQ9Y6N9 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
USH1CQ9Y6N9 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
USH1CQ9Y6N9 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.96■□□□□ 0.79
USH1CQ9Y6N9 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USH1CQ9Y6N9 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
USH1CQ9Y6N9 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
USH1CQ9Y6N9 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
USH1CQ9Y6N9 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USH1CQ9Y6N9 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USH1CQ9Y6N9 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.95■□□□□ 0.78
USH1CQ9Y6N9 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
USH1CQ9Y6N9 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USH1CQ9Y6N9 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
USH1CQ9Y6N9 NEFHP1-201ENST00000412845 2629 ntBASIC19.95■□□□□ 0.78
USH1CQ9Y6N9 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USH1CQ9Y6N9 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
USH1CQ9Y6N9 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
USH1CQ9Y6N9 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
USH1CQ9Y6N9 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
USH1CQ9Y6N9 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.95■□□□□ 0.78
USH1CQ9Y6N9 AL356441.2-201ENST00000443009 864 ntBASIC19.95■□□□□ 0.78
USH1CQ9Y6N9 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC19.95■□□□□ 0.78
USH1CQ9Y6N9 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USH1CQ9Y6N9 TRIR-205ENST00000592273 783 ntTSL 3 BASIC19.95■□□□□ 0.78
USH1CQ9Y6N9 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
USH1CQ9Y6N9 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USH1CQ9Y6N9 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USH1CQ9Y6N9 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.95■□□□□ 0.78
USH1CQ9Y6N9 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.95■□□□□ 0.78
USH1CQ9Y6N9 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USH1CQ9Y6N9 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USH1CQ9Y6N9 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USH1CQ9Y6N9 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.94■□□□□ 0.78
USH1CQ9Y6N9 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
USH1CQ9Y6N9 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms