Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC21.1■□□□□ 0.97
USP3Q9Y6I4 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP3Q9Y6I4 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
USP3Q9Y6I4 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC21.1■□□□□ 0.97
USP3Q9Y6I4 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC21.1■□□□□ 0.97
USP3Q9Y6I4 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC21.1■□□□□ 0.97
USP3Q9Y6I4 AC006557.6-201ENST00000623071 864 ntBASIC21.1■□□□□ 0.97
USP3Q9Y6I4 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC21.1■□□□□ 0.97
USP3Q9Y6I4 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
USP3Q9Y6I4 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.1■□□□□ 0.97
USP3Q9Y6I4 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
USP3Q9Y6I4 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
USP3Q9Y6I4 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP3Q9Y6I4 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
USP3Q9Y6I4 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
USP3Q9Y6I4 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
USP3Q9Y6I4 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC21.1■□□□□ 0.97
USP3Q9Y6I4 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USP3Q9Y6I4 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
USP3Q9Y6I4 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USP3Q9Y6I4 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
USP3Q9Y6I4 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USP3Q9Y6I4 RER1-204ENST00000378518 522 ntTSL 3 BASIC21.09■□□□□ 0.97
USP3Q9Y6I4 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USP3Q9Y6I4 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
USP3Q9Y6I4 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
USP3Q9Y6I4 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC21.09■□□□□ 0.97
USP3Q9Y6I4 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC21.09■□□□□ 0.97
USP3Q9Y6I4 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
USP3Q9Y6I4 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC21.09■□□□□ 0.97
USP3Q9Y6I4 AC008687.6-201ENST00000596318 630 ntBASIC21.09■□□□□ 0.97
USP3Q9Y6I4 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC21.09■□□□□ 0.97
USP3Q9Y6I4 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.09■□□□□ 0.97
USP3Q9Y6I4 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
USP3Q9Y6I4 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
USP3Q9Y6I4 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USP3Q9Y6I4 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
USP3Q9Y6I4 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USP3Q9Y6I4 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USP3Q9Y6I4 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
USP3Q9Y6I4 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
USP3Q9Y6I4 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USP3Q9Y6I4 DPP3P2-201ENST00000416030 1696 ntBASIC21.09■□□□□ 0.97
USP3Q9Y6I4 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
USP3Q9Y6I4 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
USP3Q9Y6I4 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
USP3Q9Y6I4 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
USP3Q9Y6I4 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
USP3Q9Y6I4 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC21.08■□□□□ 0.97
USP3Q9Y6I4 AL390719.1-204ENST00000412397 1219 ntBASIC21.08■□□□□ 0.97
USP3Q9Y6I4 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
USP3Q9Y6I4 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
USP3Q9Y6I4 HES2-206ENST00000489730 730 ntTSL 2 BASIC21.08■□□□□ 0.97
USP3Q9Y6I4 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
USP3Q9Y6I4 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC21.08■□□□□ 0.97
USP3Q9Y6I4 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC21.08■□□□□ 0.97
USP3Q9Y6I4 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC21.08■□□□□ 0.97
USP3Q9Y6I4 AC120498.8-201ENST00000614275 531 ntBASIC21.08■□□□□ 0.97
USP3Q9Y6I4 TMEM191A-211ENST00000637163 1067 ntBASIC21.08■□□□□ 0.97
USP3Q9Y6I4 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.08■□□□□ 0.96
USP3Q9Y6I4 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC21.08■□□□□ 0.96
USP3Q9Y6I4 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
USP3Q9Y6I4 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
USP3Q9Y6I4 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC21.07■□□□□ 0.96
USP3Q9Y6I4 DET1-207ENST00000564406 2315 ntTSL 2 BASIC21.07■□□□□ 0.96
USP3Q9Y6I4 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC21.07■□□□□ 0.96
USP3Q9Y6I4 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USP3Q9Y6I4 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC21.07■□□□□ 0.96
USP3Q9Y6I4 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP3Q9Y6I4 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP3Q9Y6I4 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC21.07■□□□□ 0.96
USP3Q9Y6I4 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC21.07■□□□□ 0.96
USP3Q9Y6I4 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC21.07■□□□□ 0.96
USP3Q9Y6I4 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC21.07■□□□□ 0.96
USP3Q9Y6I4 AC006058.3-201ENST00000606217 1069 ntBASIC21.07■□□□□ 0.96
USP3Q9Y6I4 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USP3Q9Y6I4 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.07■□□□□ 0.96
USP3Q9Y6I4 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP3Q9Y6I4 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP3Q9Y6I4 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP3Q9Y6I4 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP3Q9Y6I4 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC21.06■□□□□ 0.96
USP3Q9Y6I4 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP3Q9Y6I4 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP3Q9Y6I4 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC21.06■□□□□ 0.96
USP3Q9Y6I4 POM121L13P-201ENST00000422362 380 ntBASIC21.06■□□□□ 0.96
USP3Q9Y6I4 AC128676.1-201ENST00000454392 318 ntBASIC21.06■□□□□ 0.96
USP3Q9Y6I4 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
USP3Q9Y6I4 AL031963.3-201ENST00000606441 850 ntBASIC21.06■□□□□ 0.96
USP3Q9Y6I4 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP3Q9Y6I4 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP3Q9Y6I4 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP3Q9Y6I4 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.06■□□□□ 0.96
USP3Q9Y6I4 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP3Q9Y6I4 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP3Q9Y6I4 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC21.06■□□□□ 0.96
USP3Q9Y6I4 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP3Q9Y6I4 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
USP3Q9Y6I4 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC21.05■□□□□ 0.96
USP3Q9Y6I4 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms