Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC004911.1-201ENST00000416316 871 ntBASIC20■□□□□ 0.79
VPS9D1Q9Y2B5 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20■□□□□ 0.79
VPS9D1Q9Y2B5 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
VPS9D1Q9Y2B5 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20■□□□□ 0.79
VPS9D1Q9Y2B5 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20■□□□□ 0.79
VPS9D1Q9Y2B5 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC20■□□□□ 0.79
VPS9D1Q9Y2B5 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20■□□□□ 0.79
VPS9D1Q9Y2B5 AC073111.5-205ENST00000641717 521 ntBASIC20■□□□□ 0.79
VPS9D1Q9Y2B5 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
VPS9D1Q9Y2B5 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20■□□□□ 0.79
VPS9D1Q9Y2B5 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS9D1Q9Y2B5 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
VPS9D1Q9Y2B5 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VPS9D1Q9Y2B5 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS9D1Q9Y2B5 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.99■□□□□ 0.79
VPS9D1Q9Y2B5 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.99■□□□□ 0.79
VPS9D1Q9Y2B5 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS9D1Q9Y2B5 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS9D1Q9Y2B5 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VPS9D1Q9Y2B5 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS9D1Q9Y2B5 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VPS9D1Q9Y2B5 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS9D1Q9Y2B5 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS9D1Q9Y2B5 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.99■□□□□ 0.79
VPS9D1Q9Y2B5 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.99■□□□□ 0.79
VPS9D1Q9Y2B5 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
VPS9D1Q9Y2B5 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.99■□□□□ 0.79
VPS9D1Q9Y2B5 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.99■□□□□ 0.79
VPS9D1Q9Y2B5 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VPS9D1Q9Y2B5 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS9D1Q9Y2B5 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS9D1Q9Y2B5 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.98■□□□□ 0.79
VPS9D1Q9Y2B5 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.98■□□□□ 0.79
VPS9D1Q9Y2B5 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.98■□□□□ 0.79
VPS9D1Q9Y2B5 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.98■□□□□ 0.79
VPS9D1Q9Y2B5 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VPS9D1Q9Y2B5 AC026185.1-201ENST00000445748 174 ntBASIC19.98■□□□□ 0.79
VPS9D1Q9Y2B5 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VPS9D1Q9Y2B5 IKBKGP1-201ENST00000612193 1073 ntBASIC19.98■□□□□ 0.79
VPS9D1Q9Y2B5 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS9D1Q9Y2B5 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
VPS9D1Q9Y2B5 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.98■□□□□ 0.79
VPS9D1Q9Y2B5 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.98■□□□□ 0.79
VPS9D1Q9Y2B5 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.97■□□□□ 0.79
VPS9D1Q9Y2B5 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
VPS9D1Q9Y2B5 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS9D1Q9Y2B5 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS9D1Q9Y2B5 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
VPS9D1Q9Y2B5 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
VPS9D1Q9Y2B5 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VPS9D1Q9Y2B5 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.97■□□□□ 0.79
VPS9D1Q9Y2B5 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.97■□□□□ 0.79
VPS9D1Q9Y2B5 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.97■□□□□ 0.79
VPS9D1Q9Y2B5 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS9D1Q9Y2B5 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.97■□□□□ 0.79
VPS9D1Q9Y2B5 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.97■□□□□ 0.79
VPS9D1Q9Y2B5 VPS53-216ENST00000574029 585 ntTSL 4 BASIC19.97■□□□□ 0.79
VPS9D1Q9Y2B5 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.97■□□□□ 0.79
VPS9D1Q9Y2B5 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS9D1Q9Y2B5 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.97■□□□□ 0.79
VPS9D1Q9Y2B5 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS9D1Q9Y2B5 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS9D1Q9Y2B5 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VPS9D1Q9Y2B5 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS9D1Q9Y2B5 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VPS9D1Q9Y2B5 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS9D1Q9Y2B5 BX119927.1-201ENST00000636596 1552 ntBASIC19.96■□□□□ 0.79
VPS9D1Q9Y2B5 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VPS9D1Q9Y2B5 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS9D1Q9Y2B5 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.96■□□□□ 0.79
VPS9D1Q9Y2B5 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS9D1Q9Y2B5 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS9D1Q9Y2B5 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS9D1Q9Y2B5 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.96■□□□□ 0.79
VPS9D1Q9Y2B5 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VPS9D1Q9Y2B5 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.96■□□□□ 0.79
VPS9D1Q9Y2B5 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
VPS9D1Q9Y2B5 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS9D1Q9Y2B5 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS9D1Q9Y2B5 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.96■□□□□ 0.79
VPS9D1Q9Y2B5 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VPS9D1Q9Y2B5 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS9D1Q9Y2B5 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS9D1Q9Y2B5 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
VPS9D1Q9Y2B5 TCF3P1-201ENST00000423021 1937 ntBASIC19.96■□□□□ 0.79
VPS9D1Q9Y2B5 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.96■□□□□ 0.79
VPS9D1Q9Y2B5 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.96■□□□□ 0.79
VPS9D1Q9Y2B5 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
VPS9D1Q9Y2B5 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
VPS9D1Q9Y2B5 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.95■□□□□ 0.78
VPS9D1Q9Y2B5 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS9D1Q9Y2B5 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.95■□□□□ 0.78
VPS9D1Q9Y2B5 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.95■□□□□ 0.78
VPS9D1Q9Y2B5 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
VPS9D1Q9Y2B5 CDCA4P2-201ENST00000441182 718 ntBASIC19.95■□□□□ 0.78
VPS9D1Q9Y2B5 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.95■□□□□ 0.78
VPS9D1Q9Y2B5 AF201337.1-201ENST00000520239 748 ntBASIC19.95■□□□□ 0.78
VPS9D1Q9Y2B5 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.95■□□□□ 0.78
VPS9D1Q9Y2B5 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS9D1Q9Y2B5 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms