Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
TRIM56Q9BRZ2 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM56Q9BRZ2 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM56Q9BRZ2 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
TRIM56Q9BRZ2 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM56Q9BRZ2 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM56Q9BRZ2 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM56Q9BRZ2 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.47■□□□□ 0.87
TRIM56Q9BRZ2 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM56Q9BRZ2 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.47■□□□□ 0.87
TRIM56Q9BRZ2 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM56Q9BRZ2 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.47■□□□□ 0.87
TRIM56Q9BRZ2 AC034268.1-201ENST00000441047 882 ntBASIC20.47■□□□□ 0.87
TRIM56Q9BRZ2 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM56Q9BRZ2 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM56Q9BRZ2 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM56Q9BRZ2 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.47■□□□□ 0.87
TRIM56Q9BRZ2 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.47■□□□□ 0.87
TRIM56Q9BRZ2 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM56Q9BRZ2 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
TRIM56Q9BRZ2 DPP3P2-201ENST00000416030 1696 ntBASIC20.47■□□□□ 0.87
TRIM56Q9BRZ2 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM56Q9BRZ2 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM56Q9BRZ2 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.47■□□□□ 0.87
TRIM56Q9BRZ2 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
TRIM56Q9BRZ2 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.47■□□□□ 0.87
TRIM56Q9BRZ2 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM56Q9BRZ2 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM56Q9BRZ2 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
TRIM56Q9BRZ2 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM56Q9BRZ2 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM56Q9BRZ2 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
TRIM56Q9BRZ2 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM56Q9BRZ2 AC007952.6-201ENST00000573168 2673 ntBASIC20.46■□□□□ 0.87
TRIM56Q9BRZ2 AC003957.1-201ENST00000625108 2673 ntBASIC20.46■□□□□ 0.87
TRIM56Q9BRZ2 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
TRIM56Q9BRZ2 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.46■□□□□ 0.87
TRIM56Q9BRZ2 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC20.46■□□□□ 0.87
TRIM56Q9BRZ2 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.46■□□□□ 0.87
TRIM56Q9BRZ2 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.46■□□□□ 0.87
TRIM56Q9BRZ2 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.46■□□□□ 0.87
TRIM56Q9BRZ2 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.46■□□□□ 0.87
TRIM56Q9BRZ2 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
TRIM56Q9BRZ2 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
TRIM56Q9BRZ2 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM56Q9BRZ2 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM56Q9BRZ2 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM56Q9BRZ2 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM56Q9BRZ2 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM56Q9BRZ2 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM56Q9BRZ2 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM56Q9BRZ2 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
TRIM56Q9BRZ2 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.87
TRIM56Q9BRZ2 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM56Q9BRZ2 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM56Q9BRZ2 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM56Q9BRZ2 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM56Q9BRZ2 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.45■□□□□ 0.86
TRIM56Q9BRZ2 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM56Q9BRZ2 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.45■□□□□ 0.86
TRIM56Q9BRZ2 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM56Q9BRZ2 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.45■□□□□ 0.86
TRIM56Q9BRZ2 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.45■□□□□ 0.86
TRIM56Q9BRZ2 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.45■□□□□ 0.86
TRIM56Q9BRZ2 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.45■□□□□ 0.86
TRIM56Q9BRZ2 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.45■□□□□ 0.86
TRIM56Q9BRZ2 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM56Q9BRZ2 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM56Q9BRZ2 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM56Q9BRZ2 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM56Q9BRZ2 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM56Q9BRZ2 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
TRIM56Q9BRZ2 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM56Q9BRZ2 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.45■□□□□ 0.86
TRIM56Q9BRZ2 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.45■□□□□ 0.86
TRIM56Q9BRZ2 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM56Q9BRZ2 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.44■□□□□ 0.86
TRIM56Q9BRZ2 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM56Q9BRZ2 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.44■□□□□ 0.86
TRIM56Q9BRZ2 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.44■□□□□ 0.86
TRIM56Q9BRZ2 KRT18P5-201ENST00000436075 1291 ntBASIC20.44■□□□□ 0.86
TRIM56Q9BRZ2 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.44■□□□□ 0.86
TRIM56Q9BRZ2 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM56Q9BRZ2 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM56Q9BRZ2 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.44■□□□□ 0.86
TRIM56Q9BRZ2 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.44■□□□□ 0.86
TRIM56Q9BRZ2 AC016405.3-201ENST00000607710 860 ntBASIC20.44■□□□□ 0.86
TRIM56Q9BRZ2 AC010536.3-201ENST00000620306 533 ntBASIC20.44■□□□□ 0.86
TRIM56Q9BRZ2 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.44■□□□□ 0.86
TRIM56Q9BRZ2 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.44■□□□□ 0.86
TRIM56Q9BRZ2 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM56Q9BRZ2 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM56Q9BRZ2 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.44■□□□□ 0.86
TRIM56Q9BRZ2 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM56Q9BRZ2 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.44■□□□□ 0.86
TRIM56Q9BRZ2 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM56Q9BRZ2 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM56Q9BRZ2 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM56Q9BRZ2 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM56Q9BRZ2 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms