Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
VMP1Q96GC9 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VMP1Q96GC9 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VMP1Q96GC9 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
VMP1Q96GC9 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VMP1Q96GC9 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.19■□□□□ 0.66
VMP1Q96GC9 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.19■□□□□ 0.66
VMP1Q96GC9 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VMP1Q96GC9 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
VMP1Q96GC9 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC19.19■□□□□ 0.66
VMP1Q96GC9 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.19■□□□□ 0.66
VMP1Q96GC9 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
VMP1Q96GC9 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.19■□□□□ 0.66
VMP1Q96GC9 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VMP1Q96GC9 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VMP1Q96GC9 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.19■□□□□ 0.66
VMP1Q96GC9 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.19■□□□□ 0.66
VMP1Q96GC9 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VMP1Q96GC9 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
VMP1Q96GC9 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
VMP1Q96GC9 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VMP1Q96GC9 AC010980.2-201ENST00000587099 1412 ntBASIC19.18■□□□□ 0.66
VMP1Q96GC9 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
VMP1Q96GC9 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VMP1Q96GC9 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.18■□□□□ 0.66
VMP1Q96GC9 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.18■□□□□ 0.66
VMP1Q96GC9 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.18■□□□□ 0.66
VMP1Q96GC9 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VMP1Q96GC9 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VMP1Q96GC9 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VMP1Q96GC9 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.18■□□□□ 0.66
VMP1Q96GC9 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VMP1Q96GC9 AC142086.2-201ENST00000569753 217 ntBASIC19.18■□□□□ 0.66
VMP1Q96GC9 AC100791.3-201ENST00000617619 330 ntBASIC19.18■□□□□ 0.66
VMP1Q96GC9 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
VMP1Q96GC9 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VMP1Q96GC9 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.18■□□□□ 0.66
VMP1Q96GC9 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
VMP1Q96GC9 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VMP1Q96GC9 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
VMP1Q96GC9 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
VMP1Q96GC9 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VMP1Q96GC9 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
VMP1Q96GC9 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VMP1Q96GC9 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.17■□□□□ 0.66
VMP1Q96GC9 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.17■□□□□ 0.66
VMP1Q96GC9 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.17■□□□□ 0.66
VMP1Q96GC9 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.17■□□□□ 0.66
VMP1Q96GC9 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VMP1Q96GC9 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
VMP1Q96GC9 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VMP1Q96GC9 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VMP1Q96GC9 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
VMP1Q96GC9 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VMP1Q96GC9 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.17■□□□□ 0.66
VMP1Q96GC9 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.17■□□□□ 0.66
VMP1Q96GC9 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.17■□□□□ 0.66
VMP1Q96GC9 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.17■□□□□ 0.66
VMP1Q96GC9 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.17■□□□□ 0.66
VMP1Q96GC9 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VMP1Q96GC9 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
VMP1Q96GC9 GABARAPL3-202ENST00000624044 1851 ntBASIC19.17■□□□□ 0.66
VMP1Q96GC9 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.17■□□□□ 0.66
VMP1Q96GC9 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VMP1Q96GC9 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VMP1Q96GC9 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
VMP1Q96GC9 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VMP1Q96GC9 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VMP1Q96GC9 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VMP1Q96GC9 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VMP1Q96GC9 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VMP1Q96GC9 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
VMP1Q96GC9 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VMP1Q96GC9 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VMP1Q96GC9 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
VMP1Q96GC9 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.16■□□□□ 0.66
VMP1Q96GC9 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
VMP1Q96GC9 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VMP1Q96GC9 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VMP1Q96GC9 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VMP1Q96GC9 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
VMP1Q96GC9 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.16■□□□□ 0.66
VMP1Q96GC9 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VMP1Q96GC9 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
VMP1Q96GC9 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.16■□□□□ 0.66
VMP1Q96GC9 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.16■□□□□ 0.66
VMP1Q96GC9 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.16■□□□□ 0.66
VMP1Q96GC9 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
VMP1Q96GC9 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VMP1Q96GC9 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.16■□□□□ 0.66
VMP1Q96GC9 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.16■□□□□ 0.66
VMP1Q96GC9 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.16■□□□□ 0.66
VMP1Q96GC9 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.16■□□□□ 0.66
VMP1Q96GC9 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VMP1Q96GC9 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VMP1Q96GC9 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VMP1Q96GC9 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VMP1Q96GC9 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VMP1Q96GC9 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
VMP1Q96GC9 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms