Protein–RNA interactions for Protein: Q8IVW4

CDKL3, Cyclin-dependent kinase-like 3, humanhuman

Predicted RBP Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL3Q8IVW4 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CDKL3Q8IVW4 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CDKL3Q8IVW4 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.68■□□□□ 0.9
CDKL3Q8IVW4 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.68■□□□□ 0.9
CDKL3Q8IVW4 AC008694.1-202ENST00000636953 945 ntBASIC20.68■□□□□ 0.9
CDKL3Q8IVW4 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CDKL3Q8IVW4 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.68■□□□□ 0.9
CDKL3Q8IVW4 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
CDKL3Q8IVW4 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
CDKL3Q8IVW4 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CDKL3Q8IVW4 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDKL3Q8IVW4 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDKL3Q8IVW4 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDKL3Q8IVW4 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDKL3Q8IVW4 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
CDKL3Q8IVW4 AFG3L1P-217ENST00000557444 2447 ntBASIC20.67■□□□□ 0.9
CDKL3Q8IVW4 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDKL3Q8IVW4 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CDKL3Q8IVW4 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDKL3Q8IVW4 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.67■□□□□ 0.9
CDKL3Q8IVW4 AC007322.1-201ENST00000426983 750 ntBASIC20.67■□□□□ 0.9
CDKL3Q8IVW4 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.67■□□□□ 0.9
CDKL3Q8IVW4 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.67■□□□□ 0.9
CDKL3Q8IVW4 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
CDKL3Q8IVW4 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.67■□□□□ 0.9
CDKL3Q8IVW4 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.67■□□□□ 0.9
CDKL3Q8IVW4 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CDKL3Q8IVW4 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.67■□□□□ 0.9
CDKL3Q8IVW4 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDKL3Q8IVW4 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDKL3Q8IVW4 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.67■□□□□ 0.9
CDKL3Q8IVW4 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDKL3Q8IVW4 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CDKL3Q8IVW4 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDKL3Q8IVW4 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
CDKL3Q8IVW4 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDKL3Q8IVW4 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CDKL3Q8IVW4 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.66■□□□□ 0.9
CDKL3Q8IVW4 AC105020.6-201ENST00000621523 1217 ntBASIC20.66■□□□□ 0.9
CDKL3Q8IVW4 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.66■□□□□ 0.9
CDKL3Q8IVW4 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CDKL3Q8IVW4 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDKL3Q8IVW4 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CDKL3Q8IVW4 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDKL3Q8IVW4 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CDKL3Q8IVW4 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.66■□□□□ 0.9
CDKL3Q8IVW4 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CDKL3Q8IVW4 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.65■□□□□ 0.9
CDKL3Q8IVW4 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.65■□□□□ 0.9
CDKL3Q8IVW4 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.65■□□□□ 0.9
CDKL3Q8IVW4 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.65■□□□□ 0.9
CDKL3Q8IVW4 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDKL3Q8IVW4 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDKL3Q8IVW4 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDKL3Q8IVW4 KRT18P68-201ENST00000392293 1000 ntBASIC20.65■□□□□ 0.9
CDKL3Q8IVW4 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.65■□□□□ 0.9
CDKL3Q8IVW4 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
CDKL3Q8IVW4 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.65■□□□□ 0.9
CDKL3Q8IVW4 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.65■□□□□ 0.9
CDKL3Q8IVW4 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.65■□□□□ 0.9
CDKL3Q8IVW4 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
CDKL3Q8IVW4 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDKL3Q8IVW4 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDKL3Q8IVW4 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDKL3Q8IVW4 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CDKL3Q8IVW4 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
CDKL3Q8IVW4 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDKL3Q8IVW4 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.64■□□□□ 0.89
CDKL3Q8IVW4 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
CDKL3Q8IVW4 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CDKL3Q8IVW4 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDKL3Q8IVW4 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.64■□□□□ 0.89
CDKL3Q8IVW4 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CDKL3Q8IVW4 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
CDKL3Q8IVW4 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDKL3Q8IVW4 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDKL3Q8IVW4 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
CDKL3Q8IVW4 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.64■□□□□ 0.89
CDKL3Q8IVW4 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
CDKL3Q8IVW4 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
CDKL3Q8IVW4 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.64■□□□□ 0.89
CDKL3Q8IVW4 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDKL3Q8IVW4 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
CDKL3Q8IVW4 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CDKL3Q8IVW4 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.64■□□□□ 0.89
CDKL3Q8IVW4 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CDKL3Q8IVW4 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.63■□□□□ 0.89
CDKL3Q8IVW4 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CDKL3Q8IVW4 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDKL3Q8IVW4 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
CDKL3Q8IVW4 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDKL3Q8IVW4 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDKL3Q8IVW4 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.63■□□□□ 0.89
CDKL3Q8IVW4 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDKL3Q8IVW4 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.63■□□□□ 0.89
CDKL3Q8IVW4 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.63■□□□□ 0.89
CDKL3Q8IVW4 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.63■□□□□ 0.89
CDKL3Q8IVW4 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CDKL3Q8IVW4 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CDKL3Q8IVW4 AC022517.1-201ENST00000592429 346 ntBASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 10.2 ms