Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
VRK3Q8IV63 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VRK3Q8IV63 AC097658.1-201ENST00000475555 843 ntBASIC19.7■□□□□ 0.74
VRK3Q8IV63 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VRK3Q8IV63 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.7■□□□□ 0.74
VRK3Q8IV63 KLF13-207ENST00000560473 489 ntTSL 3 BASIC19.7■□□□□ 0.74
VRK3Q8IV63 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.7■□□□□ 0.74
VRK3Q8IV63 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
VRK3Q8IV63 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.7■□□□□ 0.74
VRK3Q8IV63 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.7■□□□□ 0.74
VRK3Q8IV63 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
VRK3Q8IV63 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
VRK3Q8IV63 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.69■□□□□ 0.74
VRK3Q8IV63 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VRK3Q8IV63 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
VRK3Q8IV63 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
VRK3Q8IV63 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
VRK3Q8IV63 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VRK3Q8IV63 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VRK3Q8IV63 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
VRK3Q8IV63 APTR-205ENST00000447009 902 ntTSL 2 BASIC19.69■□□□□ 0.74
VRK3Q8IV63 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VRK3Q8IV63 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
VRK3Q8IV63 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
VRK3Q8IV63 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VRK3Q8IV63 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.69■□□□□ 0.74
VRK3Q8IV63 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
VRK3Q8IV63 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
VRK3Q8IV63 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
VRK3Q8IV63 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
VRK3Q8IV63 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
VRK3Q8IV63 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.68■□□□□ 0.74
VRK3Q8IV63 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.68■□□□□ 0.74
VRK3Q8IV63 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VRK3Q8IV63 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.68■□□□□ 0.74
VRK3Q8IV63 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
VRK3Q8IV63 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.68■□□□□ 0.74
VRK3Q8IV63 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC19.68■□□□□ 0.74
VRK3Q8IV63 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VRK3Q8IV63 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VRK3Q8IV63 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
VRK3Q8IV63 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VRK3Q8IV63 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.68■□□□□ 0.74
VRK3Q8IV63 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VRK3Q8IV63 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
VRK3Q8IV63 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VRK3Q8IV63 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VRK3Q8IV63 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VRK3Q8IV63 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
VRK3Q8IV63 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VRK3Q8IV63 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VRK3Q8IV63 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.67■□□□□ 0.74
VRK3Q8IV63 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
VRK3Q8IV63 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VRK3Q8IV63 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VRK3Q8IV63 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VRK3Q8IV63 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.67■□□□□ 0.74
VRK3Q8IV63 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VRK3Q8IV63 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VRK3Q8IV63 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VRK3Q8IV63 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC19.67■□□□□ 0.74
VRK3Q8IV63 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VRK3Q8IV63 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VRK3Q8IV63 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
VRK3Q8IV63 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC19.67■□□□□ 0.74
VRK3Q8IV63 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
VRK3Q8IV63 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.67■□□□□ 0.74
VRK3Q8IV63 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VRK3Q8IV63 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.67■□□□□ 0.74
VRK3Q8IV63 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
VRK3Q8IV63 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
VRK3Q8IV63 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VRK3Q8IV63 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.66■□□□□ 0.74
VRK3Q8IV63 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VRK3Q8IV63 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VRK3Q8IV63 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VRK3Q8IV63 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VRK3Q8IV63 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VRK3Q8IV63 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC19.66■□□□□ 0.74
VRK3Q8IV63 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.66■□□□□ 0.74
VRK3Q8IV63 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.66■□□□□ 0.74
VRK3Q8IV63 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC19.66■□□□□ 0.74
VRK3Q8IV63 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VRK3Q8IV63 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC19.66■□□□□ 0.74
VRK3Q8IV63 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.66■□□□□ 0.74
VRK3Q8IV63 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC19.66■□□□□ 0.74
VRK3Q8IV63 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.66■□□□□ 0.74
VRK3Q8IV63 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.66■□□□□ 0.74
VRK3Q8IV63 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.66■□□□□ 0.74
VRK3Q8IV63 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.65■□□□□ 0.74
VRK3Q8IV63 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
VRK3Q8IV63 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VRK3Q8IV63 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VRK3Q8IV63 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VRK3Q8IV63 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.65■□□□□ 0.74
VRK3Q8IV63 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
VRK3Q8IV63 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VRK3Q8IV63 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.65■□□□□ 0.74
VRK3Q8IV63 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.65■□□□□ 0.74
VRK3Q8IV63 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms