Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM40Q6P9F5 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
TRIM40Q6P9F5 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 GXYLT1P5-201ENST00000614548 1189 ntBASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM40Q6P9F5 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM40Q6P9F5 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM40Q6P9F5 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM40Q6P9F5 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.29■□□□□ 0.68
TRIM40Q6P9F5 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM40Q6P9F5 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM40Q6P9F5 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM40Q6P9F5 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
TRIM40Q6P9F5 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.29■□□□□ 0.68
TRIM40Q6P9F5 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM40Q6P9F5 BX276092.2-201ENST00000417668 665 ntBASIC19.29■□□□□ 0.68
TRIM40Q6P9F5 HES2-205ENST00000487437 968 ntTSL 3 BASIC19.29■□□□□ 0.68
TRIM40Q6P9F5 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.29■□□□□ 0.68
TRIM40Q6P9F5 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC19.29■□□□□ 0.68
TRIM40Q6P9F5 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.29■□□□□ 0.68
TRIM40Q6P9F5 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM40Q6P9F5 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.29■□□□□ 0.68
TRIM40Q6P9F5 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM40Q6P9F5 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
TRIM40Q6P9F5 KRT17P1-201ENST00000399211 1546 ntBASIC19.29■□□□□ 0.68
TRIM40Q6P9F5 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.29■□□□□ 0.68
TRIM40Q6P9F5 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM40Q6P9F5 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM40Q6P9F5 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.28■□□□□ 0.68
TRIM40Q6P9F5 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM40Q6P9F5 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM40Q6P9F5 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM40Q6P9F5 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM40Q6P9F5 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM40Q6P9F5 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM40Q6P9F5 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM40Q6P9F5 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM40Q6P9F5 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM40Q6P9F5 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.27■□□□□ 0.68
TRIM40Q6P9F5 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.27■□□□□ 0.68
TRIM40Q6P9F5 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM40Q6P9F5 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
TRIM40Q6P9F5 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
TRIM40Q6P9F5 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms