Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
USP39Q53GS9 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
USP39Q53GS9 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.46■□□□□ 0.87
USP39Q53GS9 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.46■□□□□ 0.87
USP39Q53GS9 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.46■□□□□ 0.87
USP39Q53GS9 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
USP39Q53GS9 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC20.46■□□□□ 0.87
USP39Q53GS9 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.46■□□□□ 0.87
USP39Q53GS9 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
USP39Q53GS9 AC133561.5-201ENST00000635547 218 ntBASIC20.46■□□□□ 0.87
USP39Q53GS9 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.46■□□□□ 0.87
USP39Q53GS9 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
USP39Q53GS9 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
USP39Q53GS9 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
USP39Q53GS9 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
USP39Q53GS9 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
USP39Q53GS9 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
USP39Q53GS9 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
USP39Q53GS9 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
USP39Q53GS9 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP39Q53GS9 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
USP39Q53GS9 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.45■□□□□ 0.86
USP39Q53GS9 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.45■□□□□ 0.86
USP39Q53GS9 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.45■□□□□ 0.86
USP39Q53GS9 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP39Q53GS9 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
USP39Q53GS9 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP39Q53GS9 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP39Q53GS9 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
USP39Q53GS9 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP39Q53GS9 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
USP39Q53GS9 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.45■□□□□ 0.86
USP39Q53GS9 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
USP39Q53GS9 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.45■□□□□ 0.86
USP39Q53GS9 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC20.45■□□□□ 0.86
USP39Q53GS9 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC20.45■□□□□ 0.86
USP39Q53GS9 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.45■□□□□ 0.86
USP39Q53GS9 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP39Q53GS9 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
USP39Q53GS9 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
USP39Q53GS9 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP39Q53GS9 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP39Q53GS9 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
USP39Q53GS9 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP39Q53GS9 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP39Q53GS9 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.45■□□□□ 0.86
USP39Q53GS9 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.44■□□□□ 0.86
USP39Q53GS9 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
USP39Q53GS9 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.44■□□□□ 0.86
USP39Q53GS9 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
USP39Q53GS9 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
USP39Q53GS9 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
USP39Q53GS9 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.44■□□□□ 0.86
USP39Q53GS9 PRKY-204ENST00000533551 1019 ntBASIC20.44■□□□□ 0.86
USP39Q53GS9 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC20.44■□□□□ 0.86
USP39Q53GS9 RARRES2P10-201ENST00000564312 460 ntBASIC20.44■□□□□ 0.86
USP39Q53GS9 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.44■□□□□ 0.86
USP39Q53GS9 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.44■□□□□ 0.86
USP39Q53GS9 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
USP39Q53GS9 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.44■□□□□ 0.86
USP39Q53GS9 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
USP39Q53GS9 AF106564.1-201ENST00000607058 2553 ntBASIC20.43■□□□□ 0.86
USP39Q53GS9 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
USP39Q53GS9 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.43■□□□□ 0.86
USP39Q53GS9 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.43■□□□□ 0.86
USP39Q53GS9 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.43■□□□□ 0.86
USP39Q53GS9 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP39Q53GS9 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USP39Q53GS9 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.43■□□□□ 0.86
USP39Q53GS9 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USP39Q53GS9 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP39Q53GS9 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP39Q53GS9 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP39Q53GS9 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
USP39Q53GS9 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
USP39Q53GS9 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USP39Q53GS9 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC20.43■□□□□ 0.86
USP39Q53GS9 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC20.43■□□□□ 0.86
USP39Q53GS9 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.43■□□□□ 0.86
USP39Q53GS9 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
USP39Q53GS9 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP39Q53GS9 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USP39Q53GS9 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP39Q53GS9 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USP39Q53GS9 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP39Q53GS9 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.42■□□□□ 0.86
USP39Q53GS9 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USP39Q53GS9 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP39Q53GS9 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP39Q53GS9 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USP39Q53GS9 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.42■□□□□ 0.86
USP39Q53GS9 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP39Q53GS9 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.42■□□□□ 0.86
USP39Q53GS9 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USP39Q53GS9 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.42■□□□□ 0.86
USP39Q53GS9 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.42■□□□□ 0.86
USP39Q53GS9 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
USP39Q53GS9 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP39Q53GS9 AC113410.3-201ENST00000623366 203 ntBASIC20.42■□□□□ 0.86
USP39Q53GS9 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms