Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NEK3P51956 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
NEK3P51956 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
NEK3P51956 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.71■□□□□ 0.91
NEK3P51956 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.71■□□□□ 0.91
NEK3P51956 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.71■□□□□ 0.91
NEK3P51956 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NEK3P51956 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
NEK3P51956 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
NEK3P51956 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
NEK3P51956 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.71■□□□□ 0.91
NEK3P51956 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
NEK3P51956 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.71■□□□□ 0.91
NEK3P51956 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
NEK3P51956 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.71■□□□□ 0.91
NEK3P51956 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
NEK3P51956 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.71■□□□□ 0.91
NEK3P51956 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.71■□□□□ 0.91
NEK3P51956 MYC-209ENST00000641252 345 ntBASIC20.71■□□□□ 0.91
NEK3P51956 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
NEK3P51956 KRT17P1-201ENST00000399211 1546 ntBASIC20.71■□□□□ 0.91
NEK3P51956 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
NEK3P51956 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.71■□□□□ 0.91
NEK3P51956 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NEK3P51956 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NEK3P51956 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NEK3P51956 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NEK3P51956 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NEK3P51956 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
NEK3P51956 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NEK3P51956 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.71■□□□□ 0.91
NEK3P51956 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.7■□□□□ 0.91
NEK3P51956 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.7■□□□□ 0.91
NEK3P51956 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.91
NEK3P51956 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.91
NEK3P51956 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
NEK3P51956 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
NEK3P51956 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NEK3P51956 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NEK3P51956 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
NEK3P51956 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
NEK3P51956 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
NEK3P51956 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
NEK3P51956 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.7■□□□□ 0.9
NEK3P51956 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.7■□□□□ 0.9
NEK3P51956 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
NEK3P51956 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.7■□□□□ 0.9
NEK3P51956 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NEK3P51956 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.7■□□□□ 0.9
NEK3P51956 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
NEK3P51956 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NEK3P51956 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
NEK3P51956 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC20.7■□□□□ 0.9
NEK3P51956 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
NEK3P51956 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NEK3P51956 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NEK3P51956 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
NEK3P51956 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.7■□□□□ 0.9
NEK3P51956 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.7■□□□□ 0.9
NEK3P51956 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.7■□□□□ 0.9
NEK3P51956 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.7■□□□□ 0.9
NEK3P51956 AL512408.1-201ENST00000569378 2000 ntBASIC20.7■□□□□ 0.9
NEK3P51956 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NEK3P51956 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NEK3P51956 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
NEK3P51956 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NEK3P51956 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.69■□□□□ 0.9
NEK3P51956 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NEK3P51956 ABHD17AP1-201ENST00000358206 933 ntBASIC20.69■□□□□ 0.9
NEK3P51956 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
NEK3P51956 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NEK3P51956 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.69■□□□□ 0.9
NEK3P51956 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.69■□□□□ 0.9
NEK3P51956 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.69■□□□□ 0.9
NEK3P51956 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.69■□□□□ 0.9
NEK3P51956 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.69■□□□□ 0.9
NEK3P51956 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.69■□□□□ 0.9
NEK3P51956 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NEK3P51956 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC20.69■□□□□ 0.9
NEK3P51956 AC083880.1-201ENST00000608266 535 ntBASIC20.69■□□□□ 0.9
NEK3P51956 AL589743.5-201ENST00000616611 1050 ntBASIC20.69■□□□□ 0.9
NEK3P51956 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NEK3P51956 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NEK3P51956 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NEK3P51956 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
NEK3P51956 CYP21A1P-202ENST00000354927 1481 ntBASIC20.69■□□□□ 0.9
NEK3P51956 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.69■□□□□ 0.9
NEK3P51956 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NEK3P51956 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NEK3P51956 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NEK3P51956 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.68■□□□□ 0.9
NEK3P51956 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.68■□□□□ 0.9
NEK3P51956 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.68■□□□□ 0.9
NEK3P51956 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NEK3P51956 RNA5SP413-201ENST00000516373 109 ntBASIC20.68■□□□□ 0.9
NEK3P51956 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NEK3P51956 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
NEK3P51956 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.68■□□□□ 0.9
NEK3P51956 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NEK3P51956 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms