Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
CXCL12P48061 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.14■□□□□ 0.81
CXCL12P48061 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
CXCL12P48061 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.14■□□□□ 0.81
CXCL12P48061 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CXCL12P48061 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
CXCL12P48061 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.14■□□□□ 0.81
CXCL12P48061 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CXCL12P48061 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC20.14■□□□□ 0.81
CXCL12P48061 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC20.14■□□□□ 0.81
CXCL12P48061 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CXCL12P48061 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC20.14■□□□□ 0.81
CXCL12P48061 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.14■□□□□ 0.81
CXCL12P48061 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
CXCL12P48061 MIR2861-201ENST00000636310 90 ntBASIC20.14■□□□□ 0.81
CXCL12P48061 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
CXCL12P48061 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CXCL12P48061 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.14■□□□□ 0.81
CXCL12P48061 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.13■□□□□ 0.81
CXCL12P48061 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.13■□□□□ 0.81
CXCL12P48061 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CXCL12P48061 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
CXCL12P48061 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CXCL12P48061 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CXCL12P48061 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC20.13■□□□□ 0.81
CXCL12P48061 ATP5G1P1-201ENST00000448724 379 ntBASIC20.13■□□□□ 0.81
CXCL12P48061 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CXCL12P48061 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC20.13■□□□□ 0.81
CXCL12P48061 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC20.13■□□□□ 0.81
CXCL12P48061 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC20.13■□□□□ 0.81
CXCL12P48061 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CXCL12P48061 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CXCL12P48061 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.13■□□□□ 0.81
CXCL12P48061 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CXCL12P48061 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.13■□□□□ 0.81
CXCL12P48061 AC242852.2-201ENST00000615738 1807 ntBASIC20.13■□□□□ 0.81
CXCL12P48061 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CXCL12P48061 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.13■□□□□ 0.81
CXCL12P48061 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CXCL12P48061 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CXCL12P48061 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CXCL12P48061 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CXCL12P48061 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CXCL12P48061 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.12■□□□□ 0.81
CXCL12P48061 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CXCL12P48061 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.12■□□□□ 0.81
CXCL12P48061 AC010203.1-204ENST00000548782 407 ntBASIC20.12■□□□□ 0.81
CXCL12P48061 C2orf69P3-201ENST00000565542 1120 ntBASIC20.12■□□□□ 0.81
CXCL12P48061 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
CXCL12P48061 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CXCL12P48061 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.12■□□□□ 0.81
CXCL12P48061 AL031985.4-201ENST00000642138 673 ntBASIC20.12■□□□□ 0.81
CXCL12P48061 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.12■□□□□ 0.81
CXCL12P48061 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CXCL12P48061 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.12■□□□□ 0.81
CXCL12P48061 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
CXCL12P48061 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CXCL12P48061 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
CXCL12P48061 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.12■□□□□ 0.81
CXCL12P48061 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CXCL12P48061 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CXCL12P48061 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CXCL12P48061 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.11■□□□□ 0.81
CXCL12P48061 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.11■□□□□ 0.81
CXCL12P48061 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
CXCL12P48061 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CXCL12P48061 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CXCL12P48061 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CXCL12P48061 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CXCL12P48061 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.11■□□□□ 0.81
CXCL12P48061 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
CXCL12P48061 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CXCL12P48061 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC20.11■□□□□ 0.81
CXCL12P48061 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CXCL12P48061 WWOX-216ENST00000569818 525 ntBASIC20.11■□□□□ 0.81
CXCL12P48061 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CXCL12P48061 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC20.11■□□□□ 0.81
CXCL12P48061 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
CXCL12P48061 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.11■□□□□ 0.81
CXCL12P48061 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
CXCL12P48061 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CXCL12P48061 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CXCL12P48061 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CXCL12P48061 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CXCL12P48061 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CXCL12P48061 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.1■□□□□ 0.81
CXCL12P48061 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CXCL12P48061 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CXCL12P48061 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CXCL12P48061 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CXCL12P48061 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC20.1■□□□□ 0.81
CXCL12P48061 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CXCL12P48061 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.1■□□□□ 0.81
CXCL12P48061 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC20.1■□□□□ 0.81
CXCL12P48061 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CXCL12P48061 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.1■□□□□ 0.81
CXCL12P48061 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.1■□□□□ 0.81
CXCL12P48061 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.1■□□□□ 0.81
CXCL12P48061 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.1■□□□□ 0.81
CXCL12P48061 FSCN1P1-201ENST00000568912 1481 ntBASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms