Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 USP36-216ENST00000589424 970 ntTSL 5 BASIC18.42■□□□□ 0.54
RFC3P40938 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.42■□□□□ 0.54
RFC3P40938 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
RFC3P40938 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.42■□□□□ 0.54
RFC3P40938 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RFC3P40938 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RFC3P40938 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
RFC3P40938 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RFC3P40938 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.42■□□□□ 0.54
RFC3P40938 PLK5-205ENST00000642079 1969 ntBASIC18.42■□□□□ 0.54
RFC3P40938 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC18.42■□□□□ 0.54
RFC3P40938 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RFC3P40938 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC18.42■□□□□ 0.54
RFC3P40938 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RFC3P40938 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFC3P40938 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFC3P40938 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFC3P40938 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFC3P40938 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC18.41■□□□□ 0.54
RFC3P40938 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
RFC3P40938 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFC3P40938 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFC3P40938 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFC3P40938 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RFC3P40938 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFC3P40938 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFC3P40938 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFC3P40938 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC18.41■□□□□ 0.54
RFC3P40938 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.41■□□□□ 0.54
RFC3P40938 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC18.41■□□□□ 0.54
RFC3P40938 MIR2861-201ENST00000636310 90 ntBASIC18.41■□□□□ 0.54
RFC3P40938 AC026310.3-201ENST00000625186 2373 ntBASIC18.41■□□□□ 0.54
RFC3P40938 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.41■□□□□ 0.54
RFC3P40938 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RFC3P40938 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFC3P40938 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC18.41■□□□□ 0.54
RFC3P40938 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFC3P40938 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
RFC3P40938 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFC3P40938 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RFC3P40938 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC18.4■□□□□ 0.54
RFC3P40938 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
RFC3P40938 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.4■□□□□ 0.54
RFC3P40938 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFC3P40938 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
RFC3P40938 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.4■□□□□ 0.54
RFC3P40938 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RFC3P40938 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RFC3P40938 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.4■□□□□ 0.54
RFC3P40938 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFC3P40938 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
RFC3P40938 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RFC3P40938 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
RFC3P40938 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFC3P40938 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
RFC3P40938 AL390719.1-204ENST00000412397 1219 ntBASIC18.4■□□□□ 0.54
RFC3P40938 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.4■□□□□ 0.54
RFC3P40938 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RFC3P40938 RPS2P4-201ENST00000476944 856 ntBASIC18.4■□□□□ 0.54
RFC3P40938 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
RFC3P40938 AC005829.2-201ENST00000571422 1056 ntBASIC18.4■□□□□ 0.54
RFC3P40938 RN7SL471P-201ENST00000580476 299 ntBASIC18.4■□□□□ 0.54
RFC3P40938 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.4■□□□□ 0.54
RFC3P40938 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
RFC3P40938 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.4■□□□□ 0.54
RFC3P40938 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RFC3P40938 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFC3P40938 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.4■□□□□ 0.54
RFC3P40938 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.4■□□□□ 0.54
RFC3P40938 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.39■□□□□ 0.54
RFC3P40938 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
RFC3P40938 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.39■□□□□ 0.53
RFC3P40938 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFC3P40938 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFC3P40938 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFC3P40938 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RFC3P40938 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RFC3P40938 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
RFC3P40938 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.39■□□□□ 0.53
RFC3P40938 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC18.39■□□□□ 0.53
RFC3P40938 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.39■□□□□ 0.53
RFC3P40938 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC18.39■□□□□ 0.53
RFC3P40938 RNF121-214ENST00000533380 870 ntTSL 3 BASIC18.39■□□□□ 0.53
RFC3P40938 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC18.39■□□□□ 0.53
RFC3P40938 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RFC3P40938 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFC3P40938 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
RFC3P40938 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFC3P40938 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFC3P40938 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RFC3P40938 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
RFC3P40938 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC18.38■□□□□ 0.53
RFC3P40938 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.38■□□□□ 0.53
RFC3P40938 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RFC3P40938 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RFC3P40938 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC18.38■□□□□ 0.53
RFC3P40938 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
RFC3P40938 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC18.38■□□□□ 0.53
RFC3P40938 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
RFC3P40938 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms