Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSX1P28360 GABARAPL3-202ENST00000624044 1851 ntBASIC18.41■□□□□ 0.54
MSX1P28360 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
MSX1P28360 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSX1P28360 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MSX1P28360 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
MSX1P28360 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
MSX1P28360 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSX1P28360 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.4■□□□□ 0.54
MSX1P28360 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.4■□□□□ 0.54
MSX1P28360 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.4■□□□□ 0.54
MSX1P28360 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSX1P28360 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSX1P28360 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
MSX1P28360 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSX1P28360 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
MSX1P28360 AL158047.1-201ENST00000445918 881 ntBASIC18.4■□□□□ 0.54
MSX1P28360 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.4■□□□□ 0.54
MSX1P28360 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
MSX1P28360 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
MSX1P28360 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.4■□□□□ 0.54
MSX1P28360 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
MSX1P28360 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
MSX1P28360 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
MSX1P28360 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.4■□□□□ 0.54
MSX1P28360 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC18.4■□□□□ 0.54
MSX1P28360 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSX1P28360 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSX1P28360 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
MSX1P28360 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
MSX1P28360 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSX1P28360 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSX1P28360 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
MSX1P28360 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
MSX1P28360 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MSX1P28360 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MSX1P28360 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSX1P28360 AP005212.1-201ENST00000581547 1997 ntBASIC18.39■□□□□ 0.53
MSX1P28360 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC18.39■□□□□ 0.53
MSX1P28360 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
MSX1P28360 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
MSX1P28360 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSX1P28360 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
MSX1P28360 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.39■□□□□ 0.53
MSX1P28360 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.39■□□□□ 0.53
MSX1P28360 AC026366.1-201ENST00000488803 879 ntBASIC18.39■□□□□ 0.53
MSX1P28360 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MSX1P28360 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.39■□□□□ 0.53
MSX1P28360 UNC93B5-201ENST00000530315 699 ntBASIC18.39■□□□□ 0.53
MSX1P28360 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.39■□□□□ 0.53
MSX1P28360 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.39■□□□□ 0.53
MSX1P28360 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC18.39■□□□□ 0.53
MSX1P28360 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MSX1P28360 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.39■□□□□ 0.53
MSX1P28360 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
MSX1P28360 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.39■□□□□ 0.53
MSX1P28360 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSX1P28360 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSX1P28360 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
MSX1P28360 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.39■□□□□ 0.53
MSX1P28360 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MSX1P28360 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSX1P28360 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
MSX1P28360 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.38■□□□□ 0.53
MSX1P28360 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.38■□□□□ 0.53
MSX1P28360 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSX1P28360 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSX1P28360 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
MSX1P28360 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
MSX1P28360 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSX1P28360 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC18.38■□□□□ 0.53
MSX1P28360 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.38■□□□□ 0.53
MSX1P28360 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.38■□□□□ 0.53
MSX1P28360 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
MSX1P28360 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSX1P28360 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSX1P28360 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.37■□□□□ 0.53
MSX1P28360 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.37■□□□□ 0.53
MSX1P28360 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.37■□□□□ 0.53
MSX1P28360 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.37■□□□□ 0.53
MSX1P28360 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
MSX1P28360 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.37■□□□□ 0.53
MSX1P28360 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.37■□□□□ 0.53
MSX1P28360 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSX1P28360 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.37■□□□□ 0.53
MSX1P28360 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSX1P28360 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSX1P28360 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC18.37■□□□□ 0.53
MSX1P28360 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC18.37■□□□□ 0.53
MSX1P28360 AP003097.1-201ENST00000530657 1135 ntBASIC18.37■□□□□ 0.53
MSX1P28360 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.37■□□□□ 0.53
MSX1P28360 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.37■□□□□ 0.53
MSX1P28360 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.37■□□□□ 0.53
MSX1P28360 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSX1P28360 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.37■□□□□ 0.53
MSX1P28360 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC18.37■□□□□ 0.53
MSX1P28360 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.37■□□□□ 0.53
MSX1P28360 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSX1P28360 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC18.37■□□□□ 0.53
MSX1P28360 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms