Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TPM1P09493 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TPM1P09493 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TPM1P09493 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TPM1P09493 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
TPM1P09493 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TPM1P09493 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TPM1P09493 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
TPM1P09493 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
TPM1P09493 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
TPM1P09493 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC22.1■■□□□ 1.13
TPM1P09493 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
TPM1P09493 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
TPM1P09493 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
TPM1P09493 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
TPM1P09493 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC22.1■■□□□ 1.13
TPM1P09493 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC22.1■■□□□ 1.13
TPM1P09493 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC22.1■■□□□ 1.13
TPM1P09493 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC22.1■■□□□ 1.13
TPM1P09493 AL358852.1-201ENST00000623174 1268 ntBASIC22.1■■□□□ 1.13
TPM1P09493 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
TPM1P09493 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
TPM1P09493 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC22.1■■□□□ 1.13
TPM1P09493 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
TPM1P09493 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC22.1■■□□□ 1.13
TPM1P09493 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC22.1■■□□□ 1.13
TPM1P09493 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC22.1■■□□□ 1.13
TPM1P09493 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
TPM1P09493 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
TPM1P09493 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
TPM1P09493 AC098818.2-201ENST00000564925 2320 ntBASIC22.09■■□□□ 1.13
TPM1P09493 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC22.09■■□□□ 1.13
TPM1P09493 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC22.09■■□□□ 1.13
TPM1P09493 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
TPM1P09493 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC22.09■■□□□ 1.13
TPM1P09493 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
TPM1P09493 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC22.09■■□□□ 1.13
TPM1P09493 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
TPM1P09493 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
TPM1P09493 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
TPM1P09493 LBX2-AS1-202ENST00000603175 2083 ntBASIC22.09■■□□□ 1.13
TPM1P09493 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
TPM1P09493 AC090340.1-201ENST00000620778 4980 ntBASIC22.09■■□□□ 1.13
TPM1P09493 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC22.09■■□□□ 1.13
TPM1P09493 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
TPM1P09493 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC22.09■■□□□ 1.13
TPM1P09493 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
TPM1P09493 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
TPM1P09493 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
TPM1P09493 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC22.09■■□□□ 1.13
TPM1P09493 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC22.08■■□□□ 1.13
TPM1P09493 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC22.08■■□□□ 1.13
TPM1P09493 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC22.08■■□□□ 1.13
TPM1P09493 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
TPM1P09493 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC22.08■■□□□ 1.13
TPM1P09493 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC22.08■■□□□ 1.13
TPM1P09493 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC22.08■■□□□ 1.13
TPM1P09493 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
TPM1P09493 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
TPM1P09493 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.13
TPM1P09493 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC22.08■■□□□ 1.13
TPM1P09493 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC22.08■■□□□ 1.12
TPM1P09493 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
TPM1P09493 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
TPM1P09493 AC116562.4-201ENST00000641316 2276 ntBASIC22.08■■□□□ 1.12
TPM1P09493 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
TPM1P09493 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC22.07■■□□□ 1.12
TPM1P09493 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
TPM1P09493 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TPM1P09493 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TPM1P09493 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC22.07■■□□□ 1.12
TPM1P09493 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
TPM1P09493 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TPM1P09493 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TPM1P09493 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC22.07■■□□□ 1.12
TPM1P09493 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TPM1P09493 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TPM1P09493 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC22.07■■□□□ 1.12
TPM1P09493 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
TPM1P09493 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC22.07■■□□□ 1.12
TPM1P09493 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
TPM1P09493 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC22.07■■□□□ 1.12
TPM1P09493 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
TPM1P09493 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC22.07■■□□□ 1.12
TPM1P09493 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TPM1P09493 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
TPM1P09493 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
TPM1P09493 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
TPM1P09493 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TPM1P09493 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC22.07■■□□□ 1.12
TPM1P09493 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
TPM1P09493 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC22.07■■□□□ 1.12
TPM1P09493 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
TPM1P09493 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TPM1P09493 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
TPM1P09493 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TPM1P09493 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TPM1P09493 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TPM1P09493 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
TPM1P09493 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms