Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC23.76■■□□□ 1.39
HMGB1P09429 KRT8P17-201ENST00000453110 1448 ntBASIC23.76■■□□□ 1.39
HMGB1P09429 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
HMGB1P09429 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
HMGB1P09429 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
HMGB1P09429 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
HMGB1P09429 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
HMGB1P09429 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC23.76■■□□□ 1.39
HMGB1P09429 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC23.76■■□□□ 1.39
HMGB1P09429 AC112907.3-201ENST00000577781 2400 ntBASIC23.76■■□□□ 1.39
HMGB1P09429 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
HMGB1P09429 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
HMGB1P09429 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
HMGB1P09429 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
HMGB1P09429 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
HMGB1P09429 AC083906.2-201ENST00000511578 360 ntBASIC23.75■■□□□ 1.39
HMGB1P09429 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC23.75■■□□□ 1.39
HMGB1P09429 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
HMGB1P09429 AC092666.2-201ENST00000613287 246 ntBASIC23.75■■□□□ 1.39
HMGB1P09429 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
HMGB1P09429 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
HMGB1P09429 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
HMGB1P09429 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
HMGB1P09429 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
HMGB1P09429 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
HMGB1P09429 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC23.74■■□□□ 1.39
HMGB1P09429 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
HMGB1P09429 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
HMGB1P09429 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
HMGB1P09429 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
HMGB1P09429 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC23.74■■□□□ 1.39
HMGB1P09429 PPP1R14BP3-201ENST00000509033 445 ntBASIC23.74■■□□□ 1.39
HMGB1P09429 PHB2-213ENST00000546111 858 ntTSL 2 BASIC23.74■■□□□ 1.39
HMGB1P09429 AL031963.3-201ENST00000606441 850 ntBASIC23.74■■□□□ 1.39
HMGB1P09429 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC23.74■■□□□ 1.39
HMGB1P09429 SLC25A24-204ENST00000569674 2357 ntBASIC23.74■■□□□ 1.39
HMGB1P09429 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC23.74■■□□□ 1.39
HMGB1P09429 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
HMGB1P09429 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
HMGB1P09429 KRT8P20-201ENST00000423953 1409 ntBASIC23.74■■□□□ 1.39
HMGB1P09429 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
HMGB1P09429 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
HMGB1P09429 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
HMGB1P09429 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC23.74■■□□□ 1.39
HMGB1P09429 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
HMGB1P09429 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
HMGB1P09429 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC23.73■■□□□ 1.39
HMGB1P09429 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
HMGB1P09429 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
HMGB1P09429 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC23.73■■□□□ 1.39
HMGB1P09429 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC23.73■■□□□ 1.39
HMGB1P09429 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
HMGB1P09429 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
HMGB1P09429 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
HMGB1P09429 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC23.73■■□□□ 1.39
HMGB1P09429 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC23.73■■□□□ 1.39
HMGB1P09429 BX276092.2-201ENST00000417668 665 ntBASIC23.73■■□□□ 1.39
HMGB1P09429 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC23.73■■□□□ 1.39
HMGB1P09429 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC23.73■■□□□ 1.39
HMGB1P09429 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
HMGB1P09429 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
HMGB1P09429 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
HMGB1P09429 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
HMGB1P09429 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
HMGB1P09429 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
HMGB1P09429 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
HMGB1P09429 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
HMGB1P09429 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
HMGB1P09429 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
HMGB1P09429 ME2-218ENST00000640965 2476 ntTSL 5 BASIC23.72■■□□□ 1.39
HMGB1P09429 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC23.72■■□□□ 1.39
HMGB1P09429 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC23.72■■□□□ 1.39
HMGB1P09429 NCF1B-203ENST00000435988 1254 ntBASIC23.72■■□□□ 1.39
HMGB1P09429 AC023632.3-201ENST00000521633 145 ntBASIC23.72■■□□□ 1.39
HMGB1P09429 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
HMGB1P09429 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
HMGB1P09429 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
HMGB1P09429 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
HMGB1P09429 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC23.72■■□□□ 1.39
HMGB1P09429 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC23.72■■□□□ 1.39
HMGB1P09429 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
HMGB1P09429 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
HMGB1P09429 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC23.71■■□□□ 1.39
HMGB1P09429 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC23.71■■□□□ 1.39
HMGB1P09429 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC23.71■■□□□ 1.39
HMGB1P09429 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
HMGB1P09429 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC23.71■■□□□ 1.39
HMGB1P09429 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC23.71■■□□□ 1.39
HMGB1P09429 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
HMGB1P09429 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
HMGB1P09429 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
HMGB1P09429 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC23.71■■□□□ 1.39
HMGB1P09429 HLA-G-202ENST00000376815 851 ntBASIC23.71■■□□□ 1.39
HMGB1P09429 HLA-G-203ENST00000376818 1127 ntBASIC23.71■■□□□ 1.39
HMGB1P09429 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC23.71■■□□□ 1.39
HMGB1P09429 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC23.71■■□□□ 1.39
HMGB1P09429 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
HMGB1P09429 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
HMGB1P09429 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
HMGB1P09429 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC23.71■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms