Protein–RNA interactions for Protein: P04440

HLA-DPB1, HLA class II histocompatibility antigen, DP beta 1 chain, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPB1P04440 DUX4L6-201ENST00000626483 1275 ntBASIC18.04■□□□□ 0.48
HLA-DPB1P04440 DUX4L1-201ENST00000627662 1275 ntBASIC18.04■□□□□ 0.48
HLA-DPB1P04440 DUX4L8-201ENST00000629013 1275 ntBASIC18.04■□□□□ 0.48
HLA-DPB1P04440 DUX4L3-201ENST00000630187 1275 ntBASIC18.04■□□□□ 0.48
HLA-DPB1P04440 DUX4L7-201ENST00000630678 1275 ntBASIC18.04■□□□□ 0.48
HLA-DPB1P04440 DUX4L5-201ENST00000630834 1275 ntBASIC18.04■□□□□ 0.48
HLA-DPB1P04440 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DPB1P04440 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DPB1P04440 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
HLA-DPB1P04440 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DPB1P04440 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DPB1P04440 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DPB1P04440 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.03■□□□□ 0.48
HLA-DPB1P04440 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 COX20-201ENST00000366528 568 ntTSL 2 BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 AC026271.2-201ENST00000428091 497 ntBASIC18.03■□□□□ 0.48
HLA-DPB1P04440 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 TNXA-203ENST00000507684 2038 ntBASIC18.03■□□□□ 0.48
HLA-DPB1P04440 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DPB1P04440 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DPB1P04440 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DPB1P04440 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.02■□□□□ 0.48
HLA-DPB1P04440 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DPB1P04440 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
HLA-DPB1P04440 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DPB1P04440 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.02■□□□□ 0.48
HLA-DPB1P04440 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DPB1P04440 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DPB1P04440 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DPB1P04440 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DPB1P04440 MIR935-201ENST00000401179 91 ntBASIC18.02■□□□□ 0.48
HLA-DPB1P04440 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18.02■□□□□ 0.48
HLA-DPB1P04440 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DPB1P04440 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC18.02■□□□□ 0.48
HLA-DPB1P04440 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DPB1P04440 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HLA-DPB1P04440 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HLA-DPB1P04440 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.02■□□□□ 0.47
HLA-DPB1P04440 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HLA-DPB1P04440 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
HLA-DPB1P04440 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HLA-DPB1P04440 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
HLA-DPB1P04440 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
HLA-DPB1P04440 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HLA-DPB1P04440 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
HLA-DPB1P04440 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC18.01■□□□□ 0.47
HLA-DPB1P04440 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HLA-DPB1P04440 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HLA-DPB1P04440 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.01■□□□□ 0.47
HLA-DPB1P04440 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HLA-DPB1P04440 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.01■□□□□ 0.47
HLA-DPB1P04440 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HLA-DPB1P04440 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HLA-DPB1P04440 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
HLA-DPB1P04440 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HLA-DPB1P04440 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.01■□□□□ 0.47
HLA-DPB1P04440 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.01■□□□□ 0.47
HLA-DPB1P04440 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HLA-DPB1P04440 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
HLA-DPB1P04440 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.01■□□□□ 0.47
HLA-DPB1P04440 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HLA-DPB1P04440 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HLA-DPB1P04440 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
HLA-DPB1P04440 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HLA-DPB1P04440 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HLA-DPB1P04440 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HLA-DPB1P04440 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HLA-DPB1P04440 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18■□□□□ 0.47
HLA-DPB1P04440 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
HLA-DPB1P04440 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
HLA-DPB1P04440 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC18■□□□□ 0.47
HLA-DPB1P04440 AC004854.2-201ENST00000608450 1441 ntBASIC18■□□□□ 0.47
HLA-DPB1P04440 AC138932.1-201ENST00000534164 6830 ntBASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms